Ictalurus furcatus (blue catfish): 128615517
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Entry
128615517 CDS
T09387
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128615517 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ifu04131
]
128615517 (tgfbrap1)
Membrane trafficking [BR:
ifu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128615517 (tgfbrap1)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
128615517
NCBI-ProteinID:
XP_053493661
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All DBs
Position
12:4080513..4112200
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AA seq
867 aa
AA seq
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MSVKAFELVPAVEREQLAGEKTRIGVECIECCGQHLYVGTNDGFIHHFLLEEHTTAKGQL
SFSSQKLLHKQLGLKKPPSELKAASALERLIVLCDGVILLVDMVTLEPVASGGTKLKGVT
VFCVNENPVTAEPFCVEMAVASTRRRAVHICTVHEDRVQILREVATPDQPCDLSLDGYFL
CLALPTRYVILNYGSGASQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFVNSEGISQ
RAPVKWSESVIGAAVCFPYVVALDESFVTVHSMLDQQLKQTLSFSEGHILQDFEGKVVLA
STKSVYVLVPLPLERQIQDLLAGRRVEEALTLTEGAQRNIPKDKFQILHKRILQQAGFIQ
FGQLQFSEAKEHFRKGQLDVRELISLCPLLLPASSSFTRCHPPLHEFADLNHLTQGDQEK
VQSCKRFLISYLREVRASESANGFRQDIDTALLKLYAEAGHEGLLELLASDNSCLLADSA
PWLEKHHRYFALGLLHHYNGQDAAALQLWVRVVNGDLQDSTHADLFEYVVDFLSSCKNLD
LVWKYADWALQKDQKLGVRIFTKRPVSKEQTRQLNPDEVITYLQKHNQALVLYLEHVVLE
RRLQKEKYHTHLAVLYADRVLALVSRTSATEDQLSSARQKLQRLLRESNLYRVQLLLGKL
QDSELLLMERATLHGKLEEHDKALHILVHQLKNSAAAQEYCTWATAAHDHKNRGEIFHQL
LRVYLDPDVPGGPRTVEAVDLLNHHAEVFDAPKVLELLPESWSLPLLRPFLCGAVRASMH
ARHTSQIALGLARAENLQLHHDRLKHRGGPILVSGKKGCHLCHNTFSEPDCVCLPGGTPV
HTQCATQKLKGSPTKRQVDHAHTSNHT
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaggccttcgagctggtgcccgctgtggagcgggagcagttggctggcgag
aagacgcgcatcggtgttgagtgcatcgaatgctgtggccagcacctgtacgtgggcacc
aacgatggcttcatccatcacttcctgctggaggagcacaccacagctaaaggccagcta
tccttcagctcgcagaagctcctacacaaacagctcggcctcaagaagccgccgtccgag
ctaaaagctgcctcggccctggagcgcctgatcgtcttgtgcgacggtgtcatcttgctg
gtggatatggtcacactggaaccggtggcatctggagggaccaaacttaaaggcgtgact
gtgttctgtgttaacgagaaccctgtgacggccgagcctttctgcgtggagatggcggtg
gcgtccacgcggcgccgcgctgtacacatttgcaccgtgcacgaggatcgtgtgcagatc
ctgagggaagtggccactcccgatcagccatgcgatctcagcctggacggctacttcctg
tgcctggctcttcccacacggtatgtcatcctgaactatggctcaggtgcctcgcaggat
ctattcccctatgacagcgaggagaggaaacccattgtcaaaaggattggcagggaggag
tttctcctggctgcgccgggtggcctcggcatgtttgttaactctgagggcatctcccag
cgtgccccagtcaagtggtcggagagcgtgattggcgcagccgtgtgcttcccgtacgtg
gtggctctggacgagagctttgtaacggttcacagcatgctggatcagcagctcaagcag
acactctcattcagtgaaggacacatcctgcaggactttgaaggcaaagtggtgttggct
tccacaaagtcagtgtatgtgctggtgcctctgcctctggaacgacagatccaggacctg
ttggcaggacgtcgagtggaggaggcactgaccctgaccgaaggtgcacagagaaacatt
cctaaagacaagttccagatattacacaaaagaattctccagcaggcgggattcatccag
tttggccagcttcagttttctgaagctaaagagcattttaggaaggggcagctagacgta
cgcgagctgatctcactgtgcccgctgctgctgcctgcctcatcgtcgttcacacggtgc
catccgccactgcacgagttcgccgatctgaaccatctgacgcagggtgatcaggagaaa
gtgcagtcctgcaagcgcttcctcatcagctacctgcgtgaggtgcgtgctagtgagagt
gccaatggcttcagacaggatatagacactgcactgctgaagctctatgctgaggcaggt
cacgaaggcttgctggagctgctggcctctgacaactcttgcctgctggccgacagcgca
ccctggctggagaaacaccacaggtactttgctctcgggctcctgcatcactacaatggc
caggatgctgctgctctacagttgtgggttcgagttgtcaatggggacctccaggactcc
acacatgctgatctgtttgagtatgttgtggatttcctgagttcctgcaagaacctggac
ctcgtatggaagtatgcagactgggctttacagaaggaccagaagcttggagtacggatc
ttcaccaagagacctgtttccaaagagcagaccaggcagctgaatccagacgaagtgatc
acgtacctacagaagcacaaccaggctctagttctgtacttggaacatgtggttctagag
aggaggttacagaaagagaagtaccacacacacctagctgtactgtatgccgaccgagtg
ctcgctctcgtctctcgaacctcagccacggaggatcagctctcttcagcccgacagaaa
ctgcagcgattgttaagagaatccaacctgtacagagtccagctgctactgggtaaactc
caagactccgagctgctcttaatggagagagcgacactacatggtaagctggaggagcac
gataaagcactacatatcttggtgcaccagctgaagaactctgcagccgcacaggaatat
tgcacatgggcaactgcggctcacgatcacaaaaaccgtggggaaattttccatcagctg
ctgcgtgtttatttggacccggacgtacccggagggccgcggactgtggaggctgtggac
ttgctgaaccaccacgctgaggtttttgatgccccaaaggttttggaacttctccccgag
tcgtggtctctacctttgctccgccccttcctgtgtggggctgtgagggccagcatgcac
gctcgccacacctcccagatcgcactggggctcgcgcgagctgagaacctgcagctgcac
cacgacaggctgaagcatcgaggcggtccaatcctggtgtcgggaaaaaagggatgccac
ctgtgccacaacactttcagcgagccagactgcgtgtgcctcccgggtggcacgcccgtc
cacacacagtgtgccacccagaagcttaagggctcacccacaaagcgacaagtagaccac
gcccacaccagcaatcacacatga
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