Ictalurus furcatus (blue catfish): 128615554
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Entry
128615554 CDS
T09387
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128615554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128615554
03036 Chromosome and associated proteins [BR:
ifu03036
]
128615554
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128615554
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128615554
mRNA degradation factors
5'-3' decay
Decapping complex
128615554
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128615554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
128615554
NCBI-ProteinID:
XP_053493717
LinkDB
All DBs
Position
12:complement(15596802..15609565)
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AA seq
482 aa
AA seq
DB search
MATAKMESVGAVAMGISKQNGQLRGLSSQSGPSVQSNPFARVSTGGQKPAADSQEGPGIR
FGEDWKKSLQLPPKDNRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQL
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDKVQIMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPVTVQKFMAKYLKKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITAEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHSANDEAEEQETPE
EP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcaaagatggagagcgtaggtgctgttgcaatggggatcagcaagcagaac
ggacagctccgagggctgagctctcaatcaggacccagtgttcagagcaatccgtttgca
agagtttctactggaggccaaaaacccgctgcagactcgcaggaaggacctggaatccgg
tttggtgaagactggaaaaagagcctgcagcttccacccaaagacaatagaatgaaaact
tcagatgtgacggccacaaagggaaatgagtttgaagactactgcttaaagagggagtta
ctcatggggatctttgaaatggggtgggagaaaccttccccagtccaggaggagagcatc
cccattgccctgtctggtcgtgacatcctggctcgtgccaaaaacggaacaggaaagagt
ggagcatacctgattcccatgctggagaggatagacctgaagaaagattatatccaggcc
ttagtaatggtacccactcgtgagcttgcactacaggtcagccagatcagcattcagctc
agtaagcatctcggtggagtcaaagtcatggccaccactggcggaacaaaccttcgagac
gacatcatgcgtctggatgagatcgtgcatgttgtcatagctacaccaggaaggatactg
gacttgatcaagaagggtgtagcgaaagtggataaagttcagattatggtaatggatgag
gctgataagctgctctcccaggactttgtggtgctaattgaggatatcatcagctttctg
gccaagaacaggcagattttgctgtattccgccacctttcccgtcactgtgcagaaattc
atggcgaagtatctgaagaagccctatgagattaatctgatggaagagctgacactgaag
ggcatcacacagtactatgcctatgttactgagcggcagaaggtgcactgcctcaacaca
ctcttctccaggctgcaaatcaatcagtctatcatcttctgcaactcgactcagagagtg
gaactgctggccaagaagatcacacaacttggctactcctgtttttacatccatgccaag
atgatgcaggagtaccgaaacagagttttccatgacttcagaaatgggttgtgcagaaat
ctggtctgcacagatttgttcacgagaggcatcgacatccaggcagtgaacgtggtcatc
aacttcgactttccgaagaacgcagagacgtacctgcaccgcatcgggcgctcagggagg
tttggccaccttggtctggccattaacctgatcacagcagaggatcgcttcaacctgaaa
gccatcgaggaccagttggtgactgatatcaagcccatcccgagcagcatcgataaaagt
ctgtacgtggcagagttccactctgccaacgatgaggcagaggagcaggagacacctgaa
gagccctaa
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