Ictalurus furcatus (blue catfish): 128615783
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Entry
128615783 CDS
T09387
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128615783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128615783
03036 Chromosome and associated proteins [BR:
ifu03036
]
128615783
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128615783
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
128615783
Chromatin remodeling factors
BAF complex
128615783
PBAF complex
128615783
GBAF(ncBAF) complex
128615783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
128615783
NCBI-ProteinID:
XP_053494089
LinkDB
All DBs
Position
12:6908522..6939844
Genome browser
AA seq
1604 aa
AA seq
DB search
MSTPDPPLGPSPGPGPSPGPMMGPGPSPGSSHGMMGPSPGPSTTSGHAVPQQGAAGYTQQ
DSMHPMHKSLEGLHEKNVGEDSRFGQMKGVSMRAGGHAGMGPPPSPMDQHSQGYPSPLGS
SDHVSSPLPAGAPPTSGPLLSSSCTSSSPLEGTDSQPSRSGAQSNTPGSSANPTPFNQNQ
LHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQGQAMPSLPPGGGGGPGTGPGP
LGPNYSRGHVLSGPSVPPSGPNAVPPANGPPKTWPEGPMVNAATPSNAPQKLIPPQPTGR
PSPVPPSVPPAASPVMPPQTQSPGHPGHSAQPAPTIPLHQKHNRITPMQKPCGLDPVEIL
QEREYRLEARITHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRD
AALETALDAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFK
EYHRSITGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKD
KRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKKKKKKKKLENAEGQPLALGPDGEPL
DETSQMSDLPVKVIHVDSGKILSGVDAPKAGQLDTWLEMNPGYEVAPRSDSEDTGSEEDE
EDEEDQPQPSQAPLEEKKKIPDPDSEDVSEVDARHIIEHAKQDVDDEYGGAAFARGLQSY
YAVAHAVTEKVDRQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIA
LITYLMEYKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSG
KFNVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTG
TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV
LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG
TKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLYRASGKFEVLDRILPK
LRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNDPESQYFI
FLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE
EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVPDDETVNQ
MIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEEDELPTWIMKDDAEVERLTCEEEAE
KMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEVRHKKTTRKRKRDRDLDAGPS
TSGTRGARDKDEDSKRQKKRGRPPAEKITPNPPSLTKKMKKIVEAVIKYKESSNGRQLSE
VFIQLPSRKELPEYYELIRRPVDFRKIKERIRSHRYRSLNDLERDVMLLCQNAQTFNLEG
SLIYEDSIVLQSVFTSLRQKIEKEEESEGDESEEEEEEQDEGSESESRSVKVKIKLGRKE
RSAERGKGRRRGGRTRAKPVVSDDDTEDEREEERSNTASDEDQG
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagaccctccgttaggcccatcccctggtcctgggccttctcctgggccg
atgatggggcctggaccctcacctggatcctcccatggcatgatgggcccaagccctgga
ccctccaccacatctggtcacgctgtccctcagcaaggagcagctggatatacacagcag
gacagtatgcatcccatgcacaaatctctggagggtctgcatgagaagaacgtaggagag
gactctcgctttggtcagatgaaaggtgtgtccatgagagcaggtggacatgctggcatg
gggcctccaccgagtcctatggaccagcactcccaaggttacccctctccattgggctcc
tcggatcatgtctccagtcccctcccagccggcgcccctcctacctccgggcctctcctt
tcctcttcctgcacctcctccagtccactagagggcactgactcccagccgagccgctct
ggggctcagagcaacacacctggatcctccgccaacccgacaccctttaaccaaaaccag
ctgcaccagcttagggcacaaatcatggcttacaagatgctggcacgtggacagcctctc
cccgaccacctacagatggcagtacaaggcaagaggcccatgccaggcatgcagcaaggc
caggccatgccaagtctgccccctggtggaggaggagggccaggtacaggtcccggacct
ctgggtcctaactacagtcgagggcatgtgttgagtggtcccagtgtgcccccgtctggc
ccaaatgcagttccccctgccaacgggccaccaaaaacctggccagagggtcccatggtg
aacgcagccacgccttctaatgccccacagaagctgattcctccacagcccactggccgc
ccgtctccagtgccgccttctgtgccccctgctgcctccccagtcatgccccctcagact
cagtctcctggacacccggggcactcggcccagccggcacccacaatcccgctgcaccag
aaacacaaccgcatcactcccatgcagaaaccctgtggcctggaccctgtggagatcctg
caggaaagagagtacaggcttgaagcacgtataacacaccgtatccaggagctagagaat
cttccaggctcactagcaggagatctgcgtactaaggccaccatcgagctcaaagctctc
cgactgctcaactttcagagacagctgcgtcaagaggtggtggtgtgtatgaggcgtgat
gcggctcttgagacggctctggatgcgaaggcttacaagcgcagtaagagacagtccctg
cgagaggctcgcatcacagagaaattggagaaacagcagaagatcgaacaggaacgcaaa
cgacggcagaaacaccaggaatatctgaacagcatcctccagcatgccaaagactttaag
gagtaccatcgctccatcactggaaagatccagaagctgactaaagccgtggccacgtac
cacgccaacacggagcgagagcagaagaaagagaatgaacgcattgagaaggagaggatg
aggagactgatggcagaagatgaagagggttacaggaagctgatcgatcagaagaaggat
aagcgtctggcctacctgctccagcagaccgatgagtacgtggccaacctgaccgagctg
gttcgggctcacaaagcagcccaggctctcaaggagaagaagaagaagaaaaagaagaag
aagaagctggagaatgcagaggggcagccactagcattgggaccagacggagagccgctg
gacgagacgagtcagatgagcgacctgcctgtgaaggtgatccacgtggacagcgggaag
atcctgagcggagtggacgctcctaaagcgggacagctggacacctggctggagatgaac
cctggatatgaggtggctccgagatcagacagcgaggacacgggttccgaggaggacgag
gaggatgaggaagatcagccccagccatcacaggctcctttggaagagaagaagaagatt
ccagatccagacagcgaggatgtatcagaagtggacgctcgtcatatcattgagcatgct
aagcaggatgtagatgatgagtacggcggtgctgcgttcgcacgtggcctgcagtcgtac
tacgcagtggctcacgcagtcactgaaaaggtggacagacagtcgtccctgttggtcaac
gggcagctcaaacagtatcagattaagggtttggagtggctggtgtccctgtacaataat
aatctgaatggaatcctagctgatgaaatgggtttaggaaagaccatccagaccatcgcg
ctcatcacctacctcatggagtacaaacgcctcaacgggccctatctcatcatcgtaccg
ctctcaactctttctaactgggtgtacgagtttgacaaatgggccccgtccgtagtgaaa
gtctcgtacaagggatctcctgcagccagacgggcgtttgttcctcaactccgcagtggc
aaattcaatgttcttctcaccacctacgagtacatcattaaagacaaacaagtactggcg
aagattcgctggaagtatatgattgtggatgagggccaccggatgaagaatcaccactgt
aagctgactcaggtgctgaacacacactacctagctccaaggcgcgtcctgctgacgggg
acgccgctgcagaacaagctacctgagctctgggcactactcaacttcctgctgccaacc
atcttcaagagctgcagcaccttcgagcagtggttcaatgccccctttgccatgactgga
gagaaggtggacctgaacgaagaggagaccatcttgattattcgccgtctccataaagtg
ctccgccccttcctgttacgtcggctcaagaaggaggtggaagctcagctgcccgagaag
gtggaatacgtgataaagtgtgatatgtcagcgctgcagagggttctgtacagacacatg
caggccaaaggggttctgctcaccgatggatctgaaaaagacaagaagggtaaaggcggc
actaaaactctgatgaacactatcatgcagttgaggaagatctgtaatcatccctacatg
ttccagcagattgaggagtccttttctgagcacttgggtttctctggtggtatagtacaa
ggtcctgacctgtatcgagcttctggaaagtttgaggtgctggaccggattcttcccaaa
cttcgagcgaccaatcacaaagtgctgctcttctgccagatgacatcactgatgaccatc
atggaagactatttcgcataccgcaactttaaatacctccgtctggacggtaccactaag
gcagaggaccgtggcatgctgctaaagacgtttaatgatcccgagtcacagtacttcatc
ttcctgctgagcaccagggcggggggtctcggactcaacctgcagagcgcagacacggtg
gtcatctttgacagtgactggaaccctcaccaggacttgcaggctcaggaccgagctcat
cgtatcgggcagcagaacgaggtgcgggtgctgcgcttgtgcaccgtgaacagtgtagaa
gagaaaatccttgctgcggccaagtacaagctcaacgtggaccaaaaggtcatccaagca
ggcatgtttgaccagaaatcatccagtcacgagcgccgtgcgttcctgcaggccatcctg
gagcatgaggagcaggacgaggaggaggacgaagttccagatgatgaaactgtgaatcag
atgatcgcaaggagtgaagaggagtttgatcactttatgcgtatggatttggaccggcgt
cgtgaagaggctcggaacccgaagcgcaggcctcggctcatggaggaagacgagttgcct
acgtggatcatgaaagacgacgctgaggtcgagcgactcacgtgtgaggaggaggcagag
aagatgttcggccgcggctcacgccaaaggaaggaagtggactacagcgactcgctcact
gagaaacagtggctcaaggcgatagaggaaggcacactggacgagattgaggaggaagtg
cgccacaaaaagacgacccgaaagaggaagcgtgatcgtgaccttgatgctggtccatct
acatcagggacacgtggcgcaagagacaaagatgaggacagtaagagacagaagaagcgt
gggcgacctccggccgagaagataaccccgaacccgcccagcctcaccaagaagatgaag
aagattgtggaagctgttattaaatacaaagagagcagtaatggccgacagctgagcgaa
gtcttcatccagcttccgtctcgtaaagagctccctgagtactacgagctgatccgtaga
cctgtcgacttccgcaagatcaaggagcgtatccgcagccaccgctatcgcagtctgaat
gacctggagagagacgtgatgctgctgtgtcagaatgctcagaccttcaacctggagggc
tctttgatttacgaggactccatcgtgctgcagtcggtgttcaccagcctgcgacaaaag
atcgagaaggaggaggagagcgaaggagatgagagcgaggaagaggaggaggaacaggac
gaaggctccgagtctgagtctcgctcagtgaaggtaaagattaaactgggccgaaaggag
cgcagtgctgaaagaggaaagggcaggaggaggggagggagaaccagagccaaacctgtc
gtcagtgatgacgacaccgaggacgaacgagaggaggagcgctctaacactgccagtgat
gaagaccagggataa
DBGET
integrated database retrieval system
