Ictalurus furcatus (blue catfish): 128615904
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Entry
128615904 CDS
T09387
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03022
Basal transcription factors
ifu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128615904 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
128615904 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128615904 (ercc3)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128615904 (ercc3)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
128615904 (ercc3)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128615904 (ercc3)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128615904 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
128615904
NCBI-ProteinID:
XP_053494264
LinkDB
All DBs
Position
12:complement(9566892..9578682)
Genome browser
AA seq
780 aa
AA seq
DB search
MGKKGDRERKSKKHYYDDEDYDEDAPGSESQEAIPAAAGKQVDESSTKLDEYGAKDYRLQ
MLLKADHSSRPLWVAPDGHIFLEGFSPVYRYAQDFLVAIAEPVCRPSHVHEYKLTAYSLY
AAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFPDV
IQRLLQDAVIRDCRLRTAEGEEPELITEVITNKPAISKTLQDNGGASTSQSADGHCSSSQ
VPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRNDTVN
PDVNMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEA
ERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYHEYVAIKTKKRILLYTMNPNKFRA
CQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTREEQQQLLQKVLAATDLD
AEEEVVTGEFGGKTQFSRRTGTMSSMSGADDTVYMEYQSSRSSKMAALKNVHPLFKRFRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaagggtgaccgagagagaaagtcaaagaaacactattacgacgatgaggat
tatgacgaggatgcccctggcagcgagtcacaggaggccatacccgcagcggctggcaag
caggtggatgaatccagcaccaaactggatgaatacggggctaaagactacaggttacag
atgctgctgaaagcggatcattcctctcgacctctgtgggtggctcctgacggtcatatc
ttccttgaggggttctcgccggtctacaggtacgctcaggactttctggtggccatcgcc
gagccggtgtgcaggcccagccacgtgcacgagtataaactgactgcctactcgctgtac
gcggccgtcagcgtcggcctgcagacctcagacattatcgagtacctgcagaaactcagc
aagacgtccgtccctgacggcatcgttcagttcataaagttgtgcacggtgagctatggg
aaagtcaagctggtactgaaacataacaggtattttgtggaaagtgcctttccagacgtg
atccagcgactgctgcaggacgctgtgattcgagactgtcgactccgtaccgccgaggga
gaggagcctgagctcatcacagaggtcatcactaacaaacctgcgatctccaagactctg
caggataacggcggcgcgtccacgtcgcagtcagcggacggacactgcagtagttcccag
gtccccgaggacatcttcagctactatgaacagatggacaaagaggaggaggaagaggaa
gagactcagacggtctcttttgagatccggcaggagatgatcgaggagctgcagaagcgc
tgtatccagctggagtaccctctattagccgagtatgacttccgcaacgacacggtaaac
cccgacgtcaacatggacctgaagcccaccgccgtgctcagaccgtaccaggaaaagagc
ctgcgcaagatgttcggcaacggtcgcgctcgctccggtgtgatcgtcctgccctgtgga
gcggggaagtctctagtaggagtcacagcagcctgcaccgtgcgtaagcgctgtctggtg
ttggggaactcctccgtgtcagtggagcagtggaagtcccagtttaagatgtggtccacc
atcgatgactcgcagatctgccgcttcacgtcggatgccaaggacaagcccatcggctgc
tcggtggccatcagcacgtactccatgctgggccacaccaccaagcgctcctgggaggct
gagagagtgatggagtggatgcgcagccaggagtgggggctcatcatcctcgacgaggtc
cacacaatcccagcaagaatgttcaggcgtgttctgaccatagtccaggcccactgtaag
ctgggtttgaccgccaccctggtacgagaggatgataagatcgtcgatctcaacttcctg
attgggcccaaactgtacgaggccaactggatggagctgcagaacaacggctacatcgcg
aaagtgcagtgtgctgaggtatggtgtcctatgtccccggagttttatcacgaatacgtg
gctataaagacgaagaaacggatcctgctttacaccatgaaccccaacaagttccgcgcc
tgccagttcctcatccgcttccatgagagacgcaacgacaagatcatcgtcttcgccgac
aatgtcttcgcgctcaaggaatacgccatccgcctcaacaaaccgtacatttacggaccg
acgtcacaaggggagcgaatgcagatcctgcagaacttcaagcacaacccaaagatcaac
accattttcatctccaaggtaggagacacgtccttcgacctgcccgaggcaaacgttttg
attcagatctcatctcatggaggctctcgtcgacaggaggctcaaagactgggcagagtg
ctgcgtgccaagaaaggaatggttgctgaggaatacaacgcctacttctactcactggtg
tctcaggacacacaggaaatggcttattctacaaagagacagcgcttcctggtggaccag
ggatacagttttaaggtgatcactaagctggcaggaatggaagaggaggacttgatgttc
tcgacacgtgaggaacagcagcagctgctacagaaagttctggcagcgactgacctggac
gcagaggaagaggtggtgaccggagagttcggagggaaaactcagttttctcgccgaacc
ggtaccatgagctccatgtcaggagcagatgacaccgtctacatggagtaccagtcgtca
cgcagcagcaagatggcagccctcaagaacgttcaccctctcttcaaacgcttccgaaag
tga
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