Ictalurus furcatus (blue catfish): 128616372
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Entry
128616372 CDS
T09387
Symbol
u2af2b
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2b isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128616372 (u2af2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128616372 (u2af2b)
Spliceosome [BR:
ifu03041
]
Complex A
U2 snRNP components
U2 related factors
128616372 (u2af2b)
Complex B
128616372 (u2af2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Transformer
RRM_7
DUF4614
Motif
Other DBs
NCBI-GeneID:
128616372
NCBI-ProteinID:
XP_053494969
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All DBs
Position
12:complement(16134599..16147875)
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AA seq
489 aa
AA seq
DB search
MSEFDEFERQLTENKQGDGVNGHERDKENRHRRRSSSRSRSRERKRRSRERRSRERRSSS
KDRRHRRSRSPPREKKKKIKKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDG
LAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLIQAPGNPVLAV
QINQDKNFAFLELRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPVD
QSCTSAWRNFNPFLSTEQLQLWDVGVVSTVVPDSAHKLFIGGLPNYLSDDQVKELLTSFG
PLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGAKNAT
LTSINETPVTLQVPGLMNSSMNQMGGIPTEVLCLMNMVAPEELLDDDEYEEIVEDVRDEC
SKYGQVKSIEIPRPVDGLEIPGTGKIFVEFTTVFDSQKAMQALTGRKFANRVVVTKYCDP
DAYHRRDFG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtttgacgaatttgagagacaactgaccgaaaacaaacaaggtgacggcgtt
aacggccatgagcgggacaaagagaacaggcacaggcgccggagcagctcgcgtagccgt
agccgtgaaaggaagaggaggagcagggagaggaggagccgggagcgacgcagcagcagc
aaagatcgccggcatagacgcagtcgttccccaccgagggagaagaagaagaaaatcaaa
aagtactgggatgtccctcctcctggctttgagcacatcacaccaatgcagtacaaggcc
atgcaggctgctggtcagattcctgccacagcactgctgcccactatgactccagatgga
ctggccgttacgcccactccagtacctgtagtaggcagccagatgacccgccaggctcgg
aggctctatgtgggcaacataccatttggcatcacagaggagtcgatgatggacttcttc
aacgctcagatgagactagggggtcttattcaggctccaggaaatcccgtccttgctgtc
cagattaaccaggataagaactttgccttccttgagttgcgctcagtggacgagaccaca
caggcaatggcgttcgatggcatcatattccaaggccagagtctgaagatccgccggcca
cacgattaccagccgttaccaggcatgagcgagaatcccagtgtctatgttccagttgat
cagtcctgcacatcggcttggaggaattttaatccattcctcagtacagaacaacttcaa
ctctgggatgttggtgtggtgtccactgtagtccctgactctgctcataagctgtttatt
ggaggcctgcccaactatctcagtgatgaccaggtgaaagagttgttgacatcctttggg
cctttaaaggcattcaacctagtgaaggacagtgccacagggctctccaaaggctatgcc
ttctgcgaatatgttgatgtcaatcttaatgatcaggctattgcaggactaaatgggatg
cagttaggagataagaagctcctggtccagagagcaagtgtaggagccaagaatgcaact
ttgaccagcataaacgagactccggtgacgctgcaggtaccaggcctgatgaacagctca
atgaatcagatgggtggaattcccaccgaggttctgtgcctgatgaacatggtggctccg
gaggaacttctggatgatgatgagtatgaagagattgtggaggatgtcagggacgagtgc
tccaaatacggtcaggtcaaaagcatcgagatccctcgccctgtcgacggcctggagatc
cccggaaccggaaagatcttcgtggagttcacaacagttttcgattcccagaaagccatg
caagccttgacagggaggaagtttgccaacagagtggttgtgaccaaatactgcgaccct
gatgcctaccaccgccgagattttggctag
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