Ictalurus furcatus (blue catfish): 128616544 Help Entry 128616544         CDS       T09387                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism ifu  Ictalurus furcatus (blue catfish) Pathway ifu04510   Focal adhesion ifu04512   ECM-receptor interaction ifu04518   Integrin signaling ifu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ifu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128616544 (col1a1b)    04518 Integrin signaling     128616544 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     128616544 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     128616544 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ifu00536]     128616544 (col1a1b) Glycosaminoglycan binding proteins [BR:ifu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128616544 (col1a1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  128616544 NCBI-ProteinID:  XP_053495105 LinkDB All DBs Position 13:complement(4578690..4601649) Genome browser AA seq 1449 aa AA seqDB search MFSFVDIRLGLLLAAVVLVVRGQGEDDSLFNSCTLDGQSYNDKDVWKPEPCRICVCDSGT VMCDEVICEDITDCANPEIPDGECCPICIDGTETPTTDSPGVYGPKGDRGPKGEPGPVGR AGNDGIPGEPGLPGPPGPPGPPGLGGYNLPQLSYGSEKSSGISAGPGPPGPMGPRGPPGP SGSPGPQGFTGPPGEPGEPGSPGSMGPRGSIGPPGKNGDDGEAGKPGRPGERGAAGAQGG RGFPGTPGLPGIKGHRGFPGLDGAKGDSGPAGPKGEPGSPGENGVAGVMGPRGLPGERGR PGPAGPAGARGNDGNSGPAGSPGPTGPAGPPGFPGGAGAKGETGPAGGRGSEGPQGARGE PGNSGPAGAAGPPGPPGNDGSPGGKGSPGAAGITGAPGFPGTRGPAGPAGPAGSVGPKGV NGDAGAQGPKGEPGPKGEPGPAGPQGLAGPPGDEGKRGARGEPGGTGPVGPPGARGAPGN RGFPGAEGGPGPKGAPGELGPNGPAGAQGATGESGRPGEPGLPGSKGVTGSPGAPGPDGK AGPAGASGQDGAPGPPGSAGSRGAPGVMGFPGPKGADGESGKPGERGVEGPVGSVGAPGK DGDVGAPGPSGPAGPAGDKGEQGPAGPPGFQGLPGAQGATGETGKSGEQGLPGEAGVPGP SGPRGDRGLPGERGAPGPAGPTGARGSPGSAGNDGARGDPGAAGIPGGVGPAGPQGMPGE RGASGLPGARGERGDAGPKGLDGAPGKDGARGLTGAVGAPGPNGLAGEKGEIGPVGPAGA TGPRGGPGDRGEHGPPGPAGFAGPPGAAGQPGAKGEHGDTGPKGDAGPPGPPGPGGASGP QGPAGATGAKGARGGAGPPGATGFPGAAGRVGPPGPAGISGPPGPVGPGGKEGQRGARGE KGAPGRPGEVGPAGLPGPPGERGSPGSDGPAGPSGAPGPQGIGGGVGIAGSPGQRGERGL PGSPGPSGEPGKQGPTGLVGERGPPGPMGPPGLSGGTGEAGREGSPGHDGAPGRDGAPGP KGDRGESGHAGAPGAPGPPGPPGPVGPSGKHGDRGEAGPAGPAGISGPAGARGAVGPAGA RGDKGEAGETGERGIKGYRGFSGMAGLPGPAGHPGEPGPAGPTGPAGPRGPAGSTGVHGK DGMNGIPGPVGPPGPRGRSGEMGPAGAPGLPGPPGPPGPAGIGEPFPIMPQPEKAADPYH GYRADEASVRDRDAEVDTTLKSISQKIENIRSPEGTKTNPARMCRDLRMCHSEWKSGSYW VDPNQGSPLDAIKVFCNMETGETCINPTRASVPLKNWYISKNIREKKHVWFGESMPDGFQ FQYGSEGSDSEDVSIQMTFMRLMSNKASQNITYHCKNSIAYMDEASGNLKKALLLQGSND AEIRAEGNSRSTYTVSEDGCTSHTGTWGKTIIEYKTTKTSRLPIIDIAPMDIGAPNQEFG IEVGPVCFL NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatatccggttagggctgttgctcgcggccgttgtgctcgtggtg agaggacagggcgaggatgacagcttattcaatagctgcacattagacggccagtcgtac aatgacaaggacgtatggaaacctgagccatgccggatttgcgtgtgcgacagcggaact gtcatgtgcgacgaggtgatctgcgaggacataacggactgcgccaacccagaaatcccc gatggcgaatgctgccctatttgcatcgacggcacagaaacaccaaccactgatagccct ggggtttatggacccaagggtgatcgtggacctaagggtgagccgggtcccgttggacgt gccggtaacgatggtattcccggagagcctggacttcctggacctcccggcccccctgga ccccctggtcttggtggatacaacttgccccagctgtcttatggaagtgagaaatccagt ggaatatctgctggtcctggaccaccaggcccaatgggaccccgtggacctcctggacct tcaggttctcctggtcctcaaggattcactggccctccaggtgaacctggcgagcctggc tctcctggttccatgggtcctcgtggttccattggtcctcctggaaagaacggagatgat ggtgaggctggcaaacctggtcgccccggtgagcgtggagctgctggtgctcagggaggt cgtggtttccctggaacccctggacttcccggcatcaagggacacagaggtttccctggt ctagatggagctaagggagattctggccctgctggacctaagggagagcctggttcacct ggtgagaatggtgttgctggtgttatgggccctcgtggtctgcctggtgagagaggccgc cctggacctgctggacctgctggtgctcgtggtaatgatggcaactctggcccagctgga tctcctggacccactggccctgctggtcctcctggattccctggtggtgctggagccaag ggagagactggccccgctggaggccgtggatcagagggacctcagggagcccgtggtgag cctggtaactctggacctgctggagctgctggaccccctggtcctcctggtaacgatggt agtcctggtggcaagggttctcctggtgctgctggtattactggtgctcctggtttcccc ggtactcgtggacctgctggacccgctggacctgctggttctgttggacctaagggtgtt aatggtgatgctggtgcccagggacccaaaggagagcctggtcctaagggagagcctgga cctgctggacctcagggtcttgctggacctcctggtgatgagggaaagagaggagcccgt ggtgagcctggcggcactggacccgttggacctcctggagctcgtggtgcccctggcaac cgaggtttccctggtgctgaaggtggaccaggccccaagggtgcccctggtgagcttggc cccaacggacctgctggagctcagggagccactggagaatctggccgacctggagagcct ggactgcctggatccaagggtgtgactggttcccctggtgcccctggacctgatggcaaa gctggacctgctggtgcttctggtcaggacggtgcccctggacctccaggctctgctgga tctcgtggtgctcctggtgtgatgggattccctggacctaagggagctgatggtgagtct ggtaagcctggcgagagaggcgttgaaggacccgttggatctgtgggtgcccctggtaaa gatggtgatgttggtgctcctggaccttctggacctgctggacctgctggtgataaagga gaacaaggacctgctggaccacctggattccagggtcttcctggagctcagggtgccact ggtgagactggcaagtctggtgagcagggtttgcctggtgaggctggagttcctggacct tctggtcccagaggtgatagaggtcttcctggtgagcgtggtgccccaggccctgctggc cccactggcgctcgtggctctcccggatctgctggtaacgacggtgctaggggagatcct ggtgctgctggaattcctggtggtgtgggtcctgctggtccacagggaatgcccggagag cgcggcgctagtggacttcctggtgcaagaggagaaagaggtgatgctggacctaagggc cttgatggtgctcctggtaaggatggtgcgcgtggtttgactggtgctgtcggtgcccct ggacctaatggtcttgctggagaaaagggtgaaattggacctgtaggacctgctggagct actggacctcgtggtggacctggcgaccgtggtgagcacggacctcctggacctgctgga tttgctggacctcctggtgcagctggccagcctggagccaagggtgagcatggtgacact ggacctaaaggtgatgctggacctcctggacctcccggacctggtggtgcttccggtcct cagggccctgctggtgctactggagccaaaggtgctcgtggtggtgctggacctcctggt gccactggtttccctggtgctgctggtagagttggacctcctggccctgctggtatttct ggacctcctggccccgttggcccaggtggtaaagagggacagcgtggtgcacgtggtgag aagggagcacctggtcgccctggtgaggttggtcctgctggactcccaggacctcctgga gagagaggttctcccggttccgatggacctgccggtccttctggtgcccctggacctcag ggtataggtggaggtgttggtattgctggtagccctggacaaagaggagagagaggcttg ccaggttcccctggaccatctggagagccaggaaaacagggacctactggtttagttggt gagcgtggacctcctggcccaatgggaccccctggtctgagcggaggtactggtgaggct ggccgtgagggtagccctggtcatgatggtgcccctggtcgcgatggtgctcctggcccc aagggagaccgtggtgagtctggacatgccggagctccaggagctcctggaccccctgga cctcctggacccgttggtccatctggcaagcatggagatcgcggagaggctggtcccgct ggtcccgctggcatttccggtcctgctggtgcacgtggtgctgtgggccctgctggtgct cgtggagacaagggtgaggctggagagactggagagagaggcataaagggataccgtggc ttctctggcatggctggactgcctggacctgctggccaccctggtgagccaggacctgct ggacccactggccctgctggacctcgtggacctgctggctctactggtgtccatggtaag gatggcatgaatggtattcctggacctgttggacctcctggacctcgtggtcgctctgga gagatgggacctgctggtgcccctggtcttcccggacccccaggtcctccaggacctgca ggcattggtgagccgttccccatcatgccccagcctgagaaggcagctgacccataccat ggctacagagctgatgaagctagtgtgcgtgaccgcgatgctgaggtggataccaccctc aagtccatcagccaaaagatcgagaacatccgcagccctgagggaaccaagacaaaccca gctcgcatgtgccgtgacctcaggatgtgtcattctgagtggaagagtggttcctactgg gtggatcccaaccagggatctcctctggatgccatcaaggtcttctgcaacatggagact ggtgagacctgcatcaaccccactcgtgcaagcgttcctctgaagaactggtacatcagc aagaacatccgcgagaagaagcacgtctggttcggagagtccatgcctgatggcttccag ttccagtatggcagcgagggctcagactctgaagatgtgagcatccagatgaccttcatg cgcctgatgtccaacaaggcatcccagaacatcacataccactgcaagaacagcattgcc tacatggatgaggcctcaggcaacctgaagaaggctctgctcctgcagggatccaacgat gccgagatcagggctgaaggcaacagtcgctctacgtatacagtcagcgaggacggctgc acgtcgcacactggcacttggggcaagacaatcatcgaatataagacaacgaaaacatct cgtcttcccatcattgacattgctcctatggacattggtgctcccaatcaggaattcggc atagaagttggcccagtctgcttcttgtaa

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