Ictalurus furcatus (blue catfish): 128616842
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Entry
128616842 CDS
T09387
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03020
RNA polymerase
ifu04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128616842 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
128616842 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128616842 (polr3a)
Enzymes [BR:
ifu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128616842 (polr3a)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
128616842 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3654
Motif
Other DBs
NCBI-GeneID:
128616842
NCBI-ProteinID:
XP_053495653
LinkDB
All DBs
Position
13:28640424..28680102
Genome browser
AA seq
1402 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLPYGVLDHRM
GTSEKDRGCETCGKNLADCLGHYGYVDLELPCFHIGYFKAIIGILQMICKTCSRIMLSKE
ERQQFLDYLRRPGLPYLQKRGLKKKISDKCRKRNVCLYCGAFSGQVKKCGLLKIIHEKYK
SSKKVVDPIVSDFLQSFDTAIEHNKEVEGLLPRAQENLNPLVVLNLFRRIPNEDIPLLLM
NPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVTKANMELMRKLVKNGPDIHPGANF
IQQRHMQMKRFLKYGNREKMAQELKLGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGGYLLTLKDTFFDRSKACQIIASILVGKDEKLKIDLPHPAIIKPMCLWTGKQI
FSLILKPCKSCPVNANLRTKGKQYCGKGEDLCVNDSFVVIQNSELLSGSMDKGTLGSGSK
NNIFYILLRDWGQVEAADAMSRLARVAPTYLSNRGFSIGIGDVTPGQGLLKAKQELLDAG
YKKCDEYIEALNTGKLQQQPGCTAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVHTCADEPALSKNELVLTTDLIMKRNDFTC
CRDTFLQTMTGTGVQSFIEEIKKFINIVAEKIKKTRDKYGINDNGSTEPKVLYQLDRITP
TQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENSKSSMYYV
LQSLKQELPKVVVQGIPEVSRAVIHIDEQSGRQKFKLLVEGDNLRAVMATHGVNGNRTTS
NNTYEVEKTLGIEAARMTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHRADK
EPNPPRRSLLFDMPDFHIPLVS
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagcagttcagagagacagatgtggccaaaaagataagccacatctgtttt
gggatgaagtcggcggagcagatgcgtcagcaggctcacattcaggtggtcagtaagaac
ctgtacagtcaggacacgtctcacacaccgctgccctatggagtgctggaccaccgcatg
gggacaagtgagaaggaccgtggctgtgagacgtgtgggaagaacctggcggattgtttg
ggtcattacggttacgtggatttggagcttccctgtttccacatcggctactttaaagcc
atcatcggcatcctgcagatgatctgtaagacgtgttctcggatcatgttgagtaaagag
gagaggcagcagttcctggattatctgaggcgtcccgggttgccgtacctgcagaaacgc
ggcctgaagaagaaaatctccgataagtgcaggaagaggaacgtgtgtctgtactgcgga
gccttcagtggtcaggtgaagaaatgtggtctgttaaagatcatccatgagaagtataaa
agcagtaagaaggtggtggatcccatcgtctcagatttcctgcagtccttcgacacggcc
atcgaacacaacaaagaggtggagggactgctgccccgagctcaggaaaatctgaaccct
ctggtggtgctgaatcttttccggagaattcccaatgaggacattcctcttctgctgatg
aatccggaggcggggaaaccctctgaccttatcctgacccgcctcctggtcccgcccctc
tgtatccgcccctctgtcgtcagcgacctgaaatcgggtactaacgaggacgacctcacc
atgaagctgaccgagatcatcttcctcaacgacgtcatcaagaagcaccgcatgtcagga
gctaaaactcagatgatcatggaggactgggacttcctgcagctgcagtgtgctctctac
atcaacagtgaactctcaggaatccccctcaacatggcgcccaagaagtggaccagaggg
ttcgtacagagactgaagggcaaacagggacgtttccgtggtaacctgagtggaaagaga
gtggatttttccggaagaacggtcatctctcctgacccgaacctgaggatcgatgaggtc
gctgttcctgttcacgtcgccaaaatcctcacttacccagagaaggtgaccaaagccaac
atggagctgatgaggaagctggtgaagaacggaccagacattcatcctggagcaaacttc
atccagcagagacacatgcagatgaagaggttcctgaagtacgggaacagagagaagatg
gctcaggagctgaagctgggggacgtggtggagagacacatgatcgatggagacatcgtc
ctgtttaaccgccaaccgtcactacacaaactcagcatcatggcacatatcgcacgtgtg
aaaccccaccggacgttccgctttaacgagtgtgtgtgtacgccctataacgccgacttt
gatggagatgagatgaaccttcacctgccgcagactgaggaggccaaagctgaggctctc
gtactcatggggacgaaagctaaccttgtgaccccaaggaatggtgaacctctgatcgct
gctattcaggactttctcacaggtggttatctgctcactctgaaggacacgttctttgat
cgatctaaagcctgtcagatcatcgcctccatcctggtgggcaaagatgagaagctcaaa
atcgacctccctcaccctgctattataaagcccatgtgtttgtggacagggaagcagatc
tttagtttaatcctgaagccctgtaagagctgcccagtaaacgcgaacctgagaaccaaa
ggcaaacagtactgcgggaaaggagaggatctgtgtgtcaacgactcctttgtggtgatc
cagaacagtgagttactgtctggaagtatggataaaggcacgctgggttcaggatcaaag
aacaatatcttctatatcctgttgagagactggggtcaggtggaggcagctgacgccatg
agccgcctcgcccgagtcgcacctacatacctctctaaccgtgggttctccatcgggatc
ggggacgtgacacctggtcagggtctgctgaaggccaaacaggaattgctcgacgctgga
tacaagaagtgtgacgagtacatcgaggctctgaatacaggaaaactacagcaacagccg
ggttgtacagccgaggagacactggaggcgctgatccttagagagctgtcagtaattaga
gatcatgctggcagtgcgtgtctgagagagctggacaagagtaacagtccactcatcatg
gctctgtgtggctcgaaaggctcctttattaacatctctcagatgatagcgtgtgtgggt
cagcaggccatcagtggctctcgagttcctgatggctttgagaatcgatcgctgccgcac
tttgagaaacattcaaaacttcctgcagctaaaggctttgtagcagacagtttttactca
ggtttgacccccactgagttttttttccacactatggccggccgtgaggggttggtggac
acggcggtgaaaacagcagagactggctacatgcagaggcgcttggtgaagtctctggag
gatctgtgctctcagtacgacctcaccgtgcgcagctccaccggtgacatcatacagttc
atctacggcggagacggactcgaccccgccgccatggagggcaaagacgaaccgctcgag
ttcaagagagtgctggataacatccgggcggtccacacctgtgctgatgaacctgctctg
agtaaaaatgagctggtgctgaccactgacctcatcatgaagaggaacgactttacctgc
tgcagagacacattcttacagaccatgactggtactggtgttcagagctttatagaggaa
ataaaaaaatttatcaacatcgtggcagagaaaatcaagaagaccagagacaagtacggc
ataaacgataatggatccacagagcctaaagttttgtaccagctggacagaatcacaccc
acacagctggagaagtttctggaaacatgcagggacaagtacatgagagctcagatggag
cccggctcggcggtaggtgctctgtgtgctcagagtattggagagcctggaacccagatg
accctgaagacgttccactttgcgggtgtggcgtcgatgaacatcacgctgggggtacca
cgcatcaaagaaatcatcaacgcctccaagaacatcagtacaccgatcatcactgcacac
ctggacgttgaggatgatgcagacttcgctcggctggtgaagggcaggatcgagaagacg
ctcctcggagagatctcagagtacatagaggaggtgtttctgcctgatgactgcttcatc
ctggtcaaactctcacttgagagaatccgccttctcagactggaggtgaatgcagagaca
gtgaggtactctatctgtatgagtaagctgcgagtgaagccgggtgatatagcggtgcac
ggtgaggcggtggtgtgtgtgtctcctcgagagaacagcaagagctccatgtactatgtc
ctgcagtcactcaaacaggagctacccaaggttgttgtacagggcattcccgaggtttcc
cgtgctgtgatccacatcgatgagcaaagcggccgtcagaagttcaagttgctggtggag
ggagataacctgcgtgctgtcatggcaacacacggcgtcaacggcaaccgcaccacgtcc
aacaacacgtatgaggtggagaagacgctgggtatcgaggctgcgaggatgaccatcatt
aacgagatccagtacaccatggtgaatcacggcatgagcatcgaccggcgccatgtcatg
ctgctcgctgacctcatgtcctacaagggggagattctgggcatcactcgcttcggcctg
gccaagatgaaggagagcgtcctgatgctggcttccttcgagaagaccgctgatcatctg
ttcgatgctgcgtatttcggacagaaagactctgtgtgtggtgtgtctgagtgtataata
atgggaatccccatgaacatcggcactggtctgtttaaactcttacacagagcggacaaa
gaacccaatcctccacggagaagccttctgttcgacatgcctgacttccatataccactc
gtctcctaa
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integrated database retrieval system
