Ictalurus furcatus (blue catfish): 128617281
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Entry
128617281 CDS
T09387
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128617281 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128617281 (msh2)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128617281 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
128617281
NCBI-ProteinID:
XP_053496328
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Position
13:complement(19920513..19935639)
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AA seq
938 aa
AA seq
DB search
MAVQPKQNLSMDSVSETGFLNFYFSMPEKPDTTVRIFDRSDYYTVHGKDAAFAAKEVFKT
NGVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVRQYRVEVYRNKAGGKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGLGEGAAGVVGIRVGTGSDGQRVVGVGYVDSILRKLGVCEF
PDNDQFSNLEALLVQIGPKECVLPAGDTVGDLGKLRQVVQRGGILLSDRKKAEFTTKDIV
QDLNRLLKARKGETVSSAALPEMEKQIAVSCLAAVIKYLELLSDEANFSSFKMTTFDLSQ
YMRLDNAAVQALNLFQASSDDPTGTHSLAGLLNKCRTPQGQRLVSQWLKQPLMDKNKIEE
RLDLVESFVEDSELRQSCQEDLLRRVPDLNRLAKKFQRQNANLQDCYRVYQAVGQLPALV
QALERHAGKHQVLLNAAFITPLNDLVSDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTL
SELRESMDQLEKSMQAALNSAARELSLDAGKTIKLESNAQIGYFFRVTCKEEKTLRNNKK
FTTLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPLQTLNDV
IAQLDAVVSFSVVSHAAPVPYVRPRILEKGTGRLVLKGARHPCVEAQDDVAFIPNDVTFT
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDEAEVSVVDSVLARVGAGDSQ
IKGVSTFMAEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTALAQQVPTVNNLHVTALTTDNTLTMLYRVKTGVCDQSFGIHVAEMANFPK
HVIAYAREKALELEEFQDISGVDEDTGPEAKKRCLERNDGEKIIEDFLRKVKALPFQDMT
DDAIKAELHKLKAEVVSHNNAFVNKIVSHTENVKTTLE
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcaaccaaaacagaacttgtccatggacagtgtgtccgaaaccgggtttcta
aacttttatttttccatgccggaaaaaccggacactacagtgaggatatttgatcgcagt
gattattacaccgtgcacggaaaagatgctgcctttgctgcaaaagaagttttcaagacg
aatggcgttattaagatgctcggtgcgggcagcaggaggctagagagtgtggtgctcagt
aagatgaacttcgaggcgttcgtgagagacctgctgctggtcaggcagtaccgtgtggag
gtgtacaggaataaggccgggggcaagagcagcaaagatcacgactggcagatagcctac
aaggcgtctccgggaaatttgacccagtttgaagaggttctgtttggtagcggaggaggt
ttaggggaaggggctgctggagtggtggggatccgtgttggaacaggaagtgatggacaa
cgtgtcgtgggtgttggatatgttgatagcatactccgaaagctcggtgtctgcgagttt
ccagataacgaccagttctccaatctggaagctctcctggtgcagatcggccccaaagag
tgtgtgcttcctgccggagatactgtgggagatctgggtaaactcagacaggtggtgcaa
cgtggaggcattctactttcagacaggaagaaggcagagtttacaaccaaagacatagtt
caggatctgaaccgtttactgaaggctcgtaagggagagacagtgtctagcgctgcactc
ccagagatggagaaacagattgctgtgtcctgtttggctgctgttataaagtatctggag
cttctttctgatgaggccaacttcagttcattcaaaatgaccacgtttgacctcagccag
tacatgcggctcgacaacgccgctgtgcaggcgctcaacctcttccaggcttcctctgat
gatccaacaggtacacactccctggcaggacttttgaacaagtgtcgaacacctcagggc
cagcgcctggtcagccagtggcttaaacagcctctgatggacaaaaacaagatcgaggaa
aggctagaccttgtggagagttttgtggaggactctgagctgagacagagctgccaggag
gacctgctgcgtcgggtgcctgacctgaatcgcctggctaaaaaattccagcggcaaaac
gcgaacctgcaggactgttatcgtgtataccaggctgtgggtcagctgccggcgctggtg
caggccctagagagacatgctggcaaacatcaagtcctgctgaatgcagcattcattaca
cctctcaatgaccttgtctctgacttctccaagtttcaggagatgattgaaactacgctg
gacatgaaccagattgagcaccatgaatttctggtaaaaccctcctttgaccccacactg
agtgaactgagggagagcatggaccagctggagaaaagcatgcaggcagctctaaacagt
gcggcccgagagcttagtttggatgcaggtaagacaataaagctggaatccaatgcacag
ataggatacttcttccgtgtcacctgcaaagaggagaaaaccctgcgcaacaataagaag
ttcacgaccttggatgtgcagaagaacggagtgcgcttcaccaacagtaagctgagctca
ttgaatgaggagtacaccaaaagcagggaagagtatgaggaggctcagaacgccattgta
aaagagatcatcagcatcgctgctggctatgtagacccactgcagacactgaatgacgtg
atcgcacagctggatgcagtggtgagcttttcagtcgtatcccatgctgcccctgtgccc
tatgtgaggcctagaatactggagaagggtaccggcaggttagtcctgaagggagcgcgt
catccttgtgtagaagcccaggacgatgtggccttcatccccaatgatgtgaccttcact
aaaggaaaggagatgttccacatcattacaggtccaaatatgggtgggaaatccacctac
atccgtcaggtgggtgtgatcgtgctgatggcgcaggtcggctgctttgtgccatgtgat
gaagcggaggttagtgtagtggacagtgtgctggcccgtgttggtgcaggggacagccag
attaaaggagtttccacatttatggctgagatgctcgagaccgccgctatcttacgttca
gccactgagaactctctgatcataattgatgaactgggaagagggacttccacatatgat
ggctttggcttggcttgggccatctctgagtacattgctactcgcctgaagtccttctgc
ctgtttgccactcacttccatgagctgactgctttagcacagcaagtacctaccgtgaac
aacctccatgtcactgcactgaccacagacaacactctcaccatgctctacagggtgaaa
acaggtgtgtgtgaccagagctttgggattcatgtggctgagatggctaacttccccaaa
catgtcattgcttatgctcgggaaaaggctttggagcttgaggagtttcaggatatctcc
ggagttgacgaggatactggacctgaagctaaaaagcgctgcttggagagaaacgatggt
gagaagatcattgaggatttcctgagaaaggtgaaggctctgcctttccaagacatgact
gatgatgctatcaaagcggagctgcacaaattgaaggctgaggtggtctcccacaacaat
gcctttgttaataagatagtttcacatactgagaatgtgaaaactacattggaataa
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