Ictalurus furcatus (blue catfish): 128617505
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Entry
128617505 CDS
T09387
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ifu03016
]
128617505 (trub1)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
128617505 (trub1)
Transfer RNA biogenesis [BR:
ifu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
128617505 (trub1)
Prokaryotic type
128617505 (trub1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
7TM_GPCR_Str
TssO
Pus10_C
Motif
Other DBs
NCBI-GeneID:
128617505
NCBI-ProteinID:
XP_053496613
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All DBs
Position
13:complement(14640530..14645528)
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AA seq
348 aa
AA seq
DB search
MAAVNNVSLTKLQSLNGIFSIYKKSGPTSADVLNTLKQMLLKEAGVDKPNPRKRKKQAIK
LGHGGTLDSAASGVLVVGIGEGTKMLTSMLAGSKKYIAVGELGKATDTFDATGSVVQEKS
HGMLYYKYFASRSKHDIQTSCTLFLFCIFCCCCCCCCCCCFFFFFTEDHITREAFEEKLK
QFTGEIMQVPPLYSALKKDGKRLSTLLKEGQEVEAKPARPVTVYSLSLQDFNPPLFTLDV
ECGGGFYVRSLVDDLGKALSSCAHVRELTRTKQGQFTLQEHVLREERWTFQDISEVLQPC
SKPAAVHNKSKKSKRQDAASQLGSERAAKDLHHSSPDNVGEDRKHSSD
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtaaacaatgttagtttaacaaagttacaatcgttaaatggcatattctcc
atatataagaaatcgggacccacttctgcagatgtgttaaacacgctgaaacaaatgctg
ttaaaagaggctggtgtagataaaccaaaccctcggaaaaggaagaagcaggctatcaaa
ctgggccatggtgggactctggacagcgctgcttccggtgttctggtggttgggatcggt
gaagggacgaagatgctcacctccatgcttgctggatcaaagaaatacatagctgttgga
gagctgggcaaagcaaccgacacctttgatgccacaggaagtgttgttcaggagaaaagc
catggtatgttgtattataaatattttgcgtcgagaagtaaacatgatattcagacatca
tgtacattgtttttgttttgtattttttgttgttgttgttgttgttgttgttgttgttgt
tttttttttttttttactgaagatcacataacaagagaggcttttgaagagaagctgaag
cagttcactggtgaaatcatgcaggtgccccctctgtactcggcactgaaaaaagatggc
aagcgcctttctaccttgttgaaggaaggccaggaagtggaagctaagcctgcacgtcca
gttacagtttacagcctctcattacaagactttaatcccccacttttcactttggatgtc
gagtgtggtggagggttttatgtcagaagcctggtggacgatctgggaaaagccctgtcc
tcgtgtgctcatgtgcgggagctgacccggacaaagcagggccagttcactctacaagaa
catgtgttaagggaggagcgctggaccttccaggacatttctgaggtattacaaccctgc
tcaaagcctgcagctgtgcacaacaagagcaaaaaaagcaaaaggcaggatgcggcctcc
cagcttggctctgaacgtgctgctaaagatctccatcacagcagccctgataatgttggt
gaagaccgtaaacacagcagtgattaa
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