Ictalurus furcatus (blue catfish): 128617658
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Entry
128617658 CDS
T09387
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128617658 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ifu03310
]
128617658 (roraa)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128617658 (roraa)
Nuclear receptors [BR:
ifu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
128617658 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
128617658
NCBI-ProteinID:
XP_053496748
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Position
14:complement(17878392..18141966)
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AA seq
519 aa
AA seq
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MESPPDPTSEPGKSASEAASAVRESPLNLDALRKAEHQAPVRRHSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREQQQQPGEAEPLTP
TYGLSANGLTELHDELSGYMDGHTADGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTPTSGFFPYCSFSNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSIFEFGKNLCSMHLSEDELALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRTHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcctcctgatccgacgagcgagccgggtaagagcgcctccgaggcggcgagc
gcggtcagggagagcccgctgaacctggacgctctgcggaaagccgagcaccaagcgccg
gtgcgcagacacagctgctccagcaccaacagaggtatttcagtaacaaagaagacgcat
acttctcaaattgaaattattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgagggctgtaagggtttcttcaggaggagtcagcagagcaat
gcggcgtattcgtgcccacgtcaaaagaactgcctgatcgaccgtaccagccgaaaccgc
tgccagcactgcaggctgcagaagtgtctggctgtgggcatgtcacgggacgcggtgaag
ttcgggcgcatgtcaaagaagcagcgggacagcctgtatgctgaggtgcagaagcaccgt
ctccagcagcagcagagggagcagcagcagcagccgggcgaggccgagccactcacaccc
acctacgggctttcagcaaacggcctcaccgagctgcatgacgagctgagcggctacatg
gacggccacacggccgacggcaccaagcctgattcaggtgtcagcagcttctacctggac
atccagccctcacccgaccagtctggcctggacatcaacggcatcaagcccgagcccatc
tgtgacttcacgccaacctcaggcttcttcccatactgctccttcagcaacggcgagacc
tcccccaccgtctccatggccgagctagagcatctggcccagaatatctccaagtcccac
atggagacatgtcaatatctgagagaggagctgcagcagatgacctggcaggccttcctg
caggaggagatggagagctaccagaacaagcccagagaagtcatgtggcagttgtgtgcc
attaaaatcacagaggccatccagtatgtggtggagtttgccaagcgtatcgatggcttc
atggagctctgtcagaatgatcagattgtgctgctcaaagcaggctctttggaggtggtg
tttgtcagaatgtgtcgtgcctttgaccctcaaaacaacacagtctatttcgatggaaag
tatgctggccctgatgtgtttaagtcattaggttgtgacgacttgatcagctccatcttt
gagtttgggaaaaacttgtgttctatgcacctgtctgaggacgagctagccctgttctca
gcgtttgtgttgatgtctgcagaccgctcctggctccaggagaaagtgaaggtggagaag
ctacagcagaagatccagctggcccttcagcatgtcctgcagaagaatcacagagaggat
ggcatactaacaaagttaatatgcaaagtgtcgaccctgcgagcgctgtgcagcaggcat
acagagaagctgaccgcttttaaagcaatatacccggacattgtgcgtacccacttccca
cccttatacaaggagctctttggatcagactttgagcagtccatgcccgtggacgggtag
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