Ictalurus furcatus (blue catfish): 128617726
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Entry
128617726 CDS
T09387
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ifu03036
]
128617726 (tdrd12)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
128617726 (tdrd12)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128617726 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
DUF2608
Motif
Other DBs
NCBI-GeneID:
128617726
NCBI-ProteinID:
XP_053496879
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All DBs
Position
14:20253289..20275350
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AA seq
1325 aa
AA seq
DB search
MFTRTKRCVFVPSLCEVEDPGCIWGRTVKGPGVHAKSPQDYENLQVKMNLFYNKLNLDVQ
KLKPSSLKKGQVCVVFWPELRSWCRAKVESLILGSAWSQAMCFLVDHGERVVVSTDDVMA
LLDKFLQLPFRVLRFKLARIHPMKLKVHLCNESAELVPSPHWDSSATKYLHNLVQASTLV
EAVLCETHDDCTVIDLYLTIRNVKICVNDDLVVKKFACCKSEKSLGYQSGCVDRSPVCLA
WDIYSSPQHILKMNGCCTVRSAPSHFLTRKSEKDDFMPHHVKSVVTTVKSAVPSGAVSAE
SDGQEKCGVHDKNAVPMSTEEGKLKPGWVISSHSIIHLAVFIKKCHSFASLYECICRLLQ
LLNPDPINPHSESLDDNVTCCKPSKSAVLVHSATAVNPCRCLAQAPITEQFRRFLLRRKY
TGPGLAESYCWPSVARGCDTVLICHRGEDPLSYIPPLLAQLQLASLFSALTAQTGPIAVI
VCPGWEKVESVLELLEESQAAVNLNPAAVLIGVGKNEARQTKIQNNCQLLVTTPFGLARL
LEVQFFHFQRLCHLILDEAHELFSRAPEQMTAILQHYQKVVSREDRPMCVRQLVAVGSRW
CRELEPVVRNHMINPCIIITVPEEAALYGGVQQTILMSLDCNKTSVLLSFLDFSPSVAQK
TLLITNTAEEVEHVYKALSNTEAFSLKVHEGLTYQFDVVIEQWRKDVGPGTQVILVTTND
CLKALGIRDATCVLHYGFPSSPKLFGTRMFCMVENFRNLSCKNHSEGSSPAVRSLLLLSE
QNSRHVSGVLRYLKRTDAPLPPELLQFALGFQQAKEQQKAHRALCSYLKSMGFCRDNTSC
PDRHTINKILDCPQHPDSGTILVLPLYIKTASVYYGRIMDQKENGYEKLAAEMKSHYAKE
RLCATHVVEGGFYALQEEDVYHRVCLTKVPEKGGQLFSSVTARFVDEGRIQEVKSHQLLQ
LPPEFQSLPDQAVEIILCMARPIDGEMDWNPKVTRAISQKIKGKIHQANVVMCLGNTVWV
DLMVRMTRMPGLQIFINEYNVHAEILATGMGTANPQHLELLKLLCQGEEASAVVALRESN
GCESEVASLEQRGQAAEEALASQVKAGINMPECTDSEPCEPLQNLPNTNQSTDPNKGQSK
VSLEAWLDAEHMFTSADLRFLPQDGTPALSNSSDEDTLSFRSLKICSNILNVFCIYQVFF
VPFSACFSFHPQIKWFQEEESVTLKIKLTNPMMQKCEFFSDRVLYSAYVNTHHYCASLEL
YNDISPEQCSWKMECNEPVIKLVKKEKGEWQSLLNYKSAFVSYDFDHIEVEENSPSNVLV
SDILL
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgttcactaggactaagagatgtgtgtttgttccttctctctgtgaggttgaggatcca
ggatgtatttgggggcgaactgtgaaaggacctggtgtgcatgccaagagtcctcaagat
tacgagaacctgcaggttaaaatgaatctcttctataacaagctcaacttggatgtgcag
aaattaaagccatcatcattgaagaagggacaggtgtgtgtagtgttttggccagagcta
aggagctggtgtagggccaaagtggagtctctgatcctgggatcagcatggagtcaggcc
atgtgcttcttagtagaccatggcgagcgtgtcgtcgtcagcacagatgatgtgatggct
ctgcttgataagttcctgcagctgcccttccgggtgctaaggttcaaattggcacggatt
cacccgatgaaactcaaggtgcacctctgcaacgagtcagcggagcttgttccatcccct
cactgggacagctctgctacaaaatacctacacaatcttgtacaagcatctacattggtt
gaggctgttctttgtgaaacacatgatgattgcacagttattgatctgtacttgaccatc
agaaatgtgaagatctgtgtaaatgatgatttggtggtgaaaaagtttgcatgttgcaaa
agtgagaagtctctggggtatcagagcgggtgtgttgatcgctcccctgtctgcctggcc
tgggacatttacagcagtcctcaacatattctcaaaatgaatggatgctgtacagtgagg
tctgctccttcacacttcctgaccaggaagagtgagaaagatgatttcatgccacaccac
gtgaaatctgtcgtgactacagtgaaatcggctgttcccagtggagcagtatctgctgag
tctgatggacaagagaaatgtggagtacacgacaaaaatgcagtccccatgagcactgag
gaagggaaattaaagcctgggtgggtcatctcttcacattcaattattcacctggctgtc
tttataaagaaatgtcatagttttgcttctttgtatgaatgtatatgcagattgctacag
ttgctgaacccagatccaataaatccacactcggaatctcttgatgataacgttacatgc
tgtaaacccagcaagagtgcagttttggtgcactcagctaccgctgtcaacccctgtaga
tgtctagcccaggctcccatcaccgagcagtttcgaagattcctgttgaggagaaagtat
acaggaccaggcctggccgagagttactgctggccctctgtggcacgaggttgtgacaca
gtgctgatatgccacaggggagaagatcctctctcctacatcccacctctgctggctcag
ctgcagttagcctctttgttcagtgccctcactgcacaaactgggcccatagcagtgatt
gtttgtccaggttgggaaaaggtagagtcagtgctggagctattagaggagagccaggca
gcagtgaatcttaatcctgctgctgtgctgatcggagtaggcaagaatgaggccagacaa
accaaaattcagaacaactgtcagttgctggttactaccccttttggcctggccaggttg
ctggaggtgcagttcttccactttcaaaggctctgccacctgattctggatgaggctcat
gagctcttttcaagagcccctgaacagatgactgccatcttgcaacattaccagaaagtg
gtgtccagagaggatagacccatgtgtgtgcggcaacttgttgctgtaggcagtcgttgg
tgtcgggagctggagcctgtggtccggaatcacatgattaacccctgcatcattatcaca
gtgccggaagaggcggcgttatacggtggggttcaacagacaatactgatgtctctggac
tgcaataagacctcagtgctactcagctttttggacttcagcccctctgttgcccagaaa
acccttctcatcactaacactgcagaggaagtggagcatgtgtacaaggcgctcagcaac
acagaagcattctctctcaaagttcacgagggccttacctaccaatttgatgttgtgatt
gagcagtggaggaaagatgttggtccaggcacacaggttatcttggtgactaccaatgat
tgcttaaaggcccttggtatcagggatgccacatgcgtgttacattatggtttccctagc
tcccctaaactgtttgggacccggatgttctgcatggttgaaaactttcggaatctctcc
tgtaagaatcactccgagggctcctctcctgcggtgcgttctttgttgctgctgtctgag
cagaattctcgtcacgtgtctggtgtgctgcgctacctgaagcgtacagacgcgccactg
ccaccagagctcctacagtttgccctgggattccagcaggctaaggaacagcagaaagct
caccgagcactctgcagctatctgaagagcatgggcttctgcagggacaacacaagttgc
ccagacagacacacaatcaacaaaattcttgattgtccccaacacccagactctgggact
attttggtgttacccctttacattaagaccgcgagcgtgtactatggacgtattatggac
cagaaagagaacggttatgagaaacttgctgctgagatgaagtcgcattatgctaaagag
aggctttgtgcaacgcatgtggtggagggtggcttttatgcactacaggaagaagatgta
tatcatagggtgtgtctgaccaaggtgccagaaaagggaggccagctgtttagcagtgtc
acagctcgatttgtggatgaaggacgtatacaggaagtgaagtcacatcagctactgcag
cttcccccggagttccagagcttgccggatcaggctgttgaaatcattctgtgcatggcc
cgacccattgatggagagatggactggaacccaaaggttaccagagctatcagtcagaaa
atcaaaggaaaaatacatcaagccaacgtggtgatgtgcctgggcaatactgtatgggtt
gatctgatggtacgtatgacacgcatgccaggtctgcagattttcataaatgagtataat
gtccatgcagagattctggccactgggatgggcaccgcaaaccctcagcatctggaacta
ctgaagttgctctgccagggagaggaggcctctgctgtagtggcgctccgtgagagtaat
ggatgtgagagtgaggtggcgtctctggaacagaggggtcaggctgctgaggaagctctg
gccagtcaggtgaaggctggaatcaacatgcctgagtgtacagacagtgaaccctgtgaa
cctttacagaaccttccaaatacaaaccagagcaccgaccctaataaaggacaaagtaag
gtctctttggaagcctggctagatgctgaacacatgtttacatctgctgatctaagattt
ttacctcaggatgggactcctgctctttctaacagctcagatgaagacactttatctttc
aggtctttaaagatatgcagcaatattctgaatgtattttgtatttatcaagtttttttt
gtccctttttctgcatgttttagttttcacccacagatcaagtggtttcaagaagaagag
tcagtcactcttaaaataaagcttaccaaccccatgatgcagaagtgtgaattcttctct
gacagagtcctttacagtgcatatgtaaacacccaccattactgtgccagtctggagctg
tacaatgacatcagcccagagcagtgttcatggaaaatggaatgcaatgaaccagtaatc
aaattggtgaagaaagagaaaggagagtggcagtcactacttaactacaagagtgctttt
gtaagctatgattttgaccacattgaagttgaagaaaattctccctccaatgttctagtg
tcagatatcctgctgtaa
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