KEGG   Ictalurus furcatus (blue catfish): 128617811
Entry
128617811         CDS       T09387                                 
Symbol
skic8
Name
(RefSeq) SKI8 subunit of superkiller complex protein
  KO
K12602  WD repeat-containing protein 61
Organism
ifu  Ictalurus furcatus (blue catfish)
Pathway
ifu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    128617811 (skic8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ifu03019]
    128617811 (skic8)
Messenger RNA biogenesis [BR:ifu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     128617811 (skic8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 eIF2A WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_Nup120_160 Ge1_WD40 NBCH_WD40 PROPPIN WDR54 WD40_like VPS8_N Beta-prop_VPS8 Beta-prop_DCAF12 WD_LRWD1 Beta-prop_IFT122_2nd DUF2415 Nucleoporin_N
Other DBs
NCBI-GeneID: 128617811
NCBI-ProteinID: XP_053496942
LinkDB
Position
14:complement(4708788..4720704)
AA seq 305 aa
MSTQYSILFKQEHAHDDAIWTAAWGKSEKDGSETIITGSLDDMVKVWKWSDEKLELQWTL
EGHQLGVVSVDISHNGAIAASSSLDAHIRLWDLESGKQIKSMDAGPVDAWTVAFSPDSKY
IATGSHLGKVNIFGIESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLSVAF
SPDNTHFVSSSSDKSVKVWEASTRACVNTFFDHQDQVWSVKYNSTGSKIISAGDDRAIHI
YDCPM
NT seq 918 nt   +upstreamnt  +downstreamnt
atgagcactcaatacagtatactgttcaagcaggagcatgcccatgatgatgccatatgg
acggcagcatgggggaaaagcgagaaggatggatcagagactatcatcactggttctctg
gatgacatggtgaaagtgtggaaatggtcagatgagaagctggagctacagtggactctg
gaaggccaccagctgggtgtggtgtctgtggacattagccacaatggcgccatcgccgcc
tccagctctctggatgctcacatccgtctctgggacctggagtccggcaaacagattaaa
tccatggatgcaggaccagtcgatgcctggactgtagcgttctcccccgactccaaatac
atagccacaggcagccatcttggcaaggtgaacatctttggcattgagagtgggaagaaa
gaatactccctggacaccagagggaaattcattctcagcatcgcctatagcccagatgga
aagtacttagccagcggtgccatcgatggaatcattaacatcttcgacattgcaactggg
aaactcctccacacactggaaggccacgccatgcccatccgctctctcacattctctccc
gactctcagctcttagtcacagcctccgatgacggctacatcaagatttatgacgtacag
catgctaacctggcaggtactctgagtggccatgcgtcttgggtgctcagcgttgccttt
tcacctgataacacacactttgtctccagctcgtcagataagagtgtgaaggtgtgggag
gcaagcaccagggcgtgcgtgaacactttctttgaccatcaggaccaggtatggagcgtg
aagtacaacagcactggctcgaagatcatttcggctggagacgacagagccatccacatt
tacgactgtcccatgtga

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