Ictalurus furcatus (blue catfish): 128617907
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Entry
128617907 CDS
T09387
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu02010
ABC transporters
ifu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128617907 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128617907 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ifu02000
]
128617907 (abca1b)
Transporters [BR:
ifu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
128617907 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
128617907
NCBI-ProteinID:
XP_053497108
LinkDB
All DBs
Position
14:12352191..12387019
Genome browser
AA seq
2283 aa
AA seq
DB search
MSVSTQLGLLLWKNFTCRRRQTFQLLIEIVWPLFIFFILIAVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIVCNANNPCFRHPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLDGFKELINAVKAMQNNTSGFKLKDFLNDNETLSTFLMQNASLTDNVVQEILMAEVNLE
KVLTQGYGVHLRTMCNTSTLEQFVTFPNRKVADLTHNIICSSSQGWLNQAEKHFLANMDF
FRPLRSDIRPERNDTRQVAKITDNLLESLGSVAVELAGMRSWSDLRNEILFLTQNATGSP
SQMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNFKAMFGNYNSSDEEPVSVYDNTSTPYCN
NLMKNLETSPISRMIWRALKPLLMGKILYTPHTPATQKIIQEVNRTFQELGILRDLGGMW
EEARPKVWNFMENSEEVDLVRMLLQNNVTAYFFSAKLSGSQWSVQDLSSFLTKHSEDTRP
PGTAFTWRNVFNETDQAIMSISRFMECVNLDKLEPVSTEEKLVNESLGLLDNRKFWAGIV
FPDIDLNSSELPPHVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDLRYVWGGFSYLQ
DVIEQSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIIIK
SVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLVFALKMGNLLPYSDPGV
VFLFLGSFAVVTIMQCFLISTAFSRANLAAACGGIIYFTLYLPYVLCVAWEDYVGLPTKV
IASILSPVAFGFGCEYFALFEEQGVGIQWSNLISSPMEGDDYSLTTAIILMYFDAFLYGV
MTWYIEAVFPGQYGIPRPWYFPFTKSYWFGEGEQNQAPTIQGKKANAGAVCIEEEPTHLD
LGVYIKNLVKVYRNGKKLAVDDLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTFGT
AYIMGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEKKVKAEMDQIL
YDTGLPHKRKSKTSELSGGMQRKLSVALAFVGDSKVVILDEPTAGVDPYARRGIWDLLLK
YRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKKEPEA
SLSSSRNSTTTESYIKKDEEDTESSSDAGLGSDHESDAATAIGTSWTDSPVVPADIALIS
GLILKHVPNARMVEDLGHEITYILPYESAKDGAFVDLLHDLDDHLADLGISSYGVSDTTL
EEIFLKVAEDSGVDTEMMSDGTLPIRRRRRHAFGADHQSCLKPLTEDDNFDCNESDADPE
SRETDYLSNTDGKGSYQIQGWTLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIA
LVFSLIVPPFGKYPSLALQPWMYEDQVTFISNDAPEDASTQKLLSALTDDPGFGTRCMEG
EPIPNAPCTMGDEDWSIPEVTENVWEVFRNENWTMENPSPECECSCNGKKKMLPECPAGA
GGLPPPQIKISDRDTLQNLTGRNISDYLVKTYAEIIGKSLKNKVWVNEFRYGGFSLGARS
TQVLPPAEEIDDAISRVREIFQLKKNSGTAADRFLNSLSSFINGLDTKNNVKIWFNNKGW
HSIGSFLNVMNNGILRANLPPGKDPRKYGITAYNHPLNLTKEQISQVALVTTSVDVLVSI
CVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPYLYWLANFIWDMCNYIVPATLVVI
IFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFLFQIPSTAYVVLTSVNILIGI
NGSVSTFVLELFGGDKIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENR
FRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFFIKPRALRPKLSPIGEEDEDVARER
QRIISGAGQGDILELRQLTKVYERKKKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKML
TGDSAVTSGEAFLARKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEG
EVCEVAEWGIRKLGLIKYADKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKA
RRALWNCIHSIIKAGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPEPDLQPVMKFIEIELPGSILKEKHRNMLQYQLPSSLSSLAHIFSILAKHKD
FLQIEDYSVSQTTLDQVFVNFAKDQSDDHCDHSIRRKEAIVNIPLLSLPATLKDEENHKE
SFV
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctccactcagctgggcctgctgctatggaagaacttcacttgtaggagacga
caaacgttccagctgcttattgagattgtgtggcccctctttatcttcttcatcttgatt
gctgtgagattgagctaccccccatatgagcaacatgagtgtcactttcccaacaaagcc
atgccctcagcaggcaccctgccatggatccagggcattgtgtgtaatgccaataaccca
tgtttccgtcaccccaccccaggagaatcgcctggagtagtcggcaacttcaacgattcc
ataatatcacggcttttttcggatgccaagaaaatcctcctgtacagtcaaaatgacaaa
aatcttgatggatttaaagagttaatcaatgcagtgaaagccatgcagaacaacacttca
ggtttcaagcttaaagacttcctaaatgacaacgagaccctgtctactttcctcatgcaa
aatgcttccctcacagataatgttgtacaggagattctgatggcagaagtgaacctggaa
aaggtgctaacacaaggatatggggtacatctgagaaccatgtgtaacacgtccaccctg
gagcaattcgtgactttcccaaacaggaaagtagcagacctcacccacaacattatctgc
agctcatctcagggctggctgaatcaagctgagaaacacttcctggccaatatggacttc
tttagacctctaaggtcagacataagacctgagagaaatgacacccggcaagttgccaaa
atcacagacaacctcttggaaagcctgggttctgtagctgtggagttggccggcatgcgg
agctggagtgacctgcgcaatgagatcctctttctgacccagaatgccactggttcaccc
agtcagatgtaccaggctgtttcaagaatagtgtgtggacaccctgaaggtggtggcctc
aaaatcaagtctcttaactggtatgaggacagcaacttcaaagcaatgtttggcaactac
aacagcagcgatgaggaacctgtttcagtctacgacaatacgagcactccctactgtaac
aatctaatgaagaaccttgagactagccccatctctcggatgatctggagagcactgaag
cctctgctcatggggaagattctgtacacacctcacacccctgccacacaaaagatcatc
caagaggtcaacaggacatttcaggagctgggaattctccgagatctgggtgggatgtgg
gaagaggccaggcccaaggtctggaacttcatggagaacagtgaagaggtggacctagtg
cggatgttactacaaaacaatgttacagcctatttcttcagtgccaagctgagtggtagt
cagtggagtgtgcaggatcttagcagtttcctgaccaagcattccgaggacactcgtcca
cctggtacagcattcacatggagaaatgtcttcaatgaaaccgatcaagctattatgagc
atatcccgcttcatggagtgtgtgaatctggataaattagagcctgtgagcactgaggag
aagttagtgaatgagtctcttggtctgctagataacagaaagttctgggctggaattgtg
ttccccgatattgatctaaacagctcagagcttcctccccatgtcaactacaaaatccgc
atggacattgacaatgtggagcgcaccaacaagatcaaggatgcgtactgggaccctggc
cccagagctgacccatttgaggacttgcggtacgtttggggcggtttctcctacctccag
gatgttatagaacagagcatcatcagagctgtaacaggaactaaagagaagactggagtc
tacatccagcagatgccttacccatgctatgtcgacgatattttcctgcgtgtgatgagc
cgctccatgcccctcttcatgaccctagcctggatgtactctgtggccattataataaag
agcgttgtctacgagaaggaggcccgcctcaaggagaccatgaggattatgggattggac
aatggtatcctatggttcagctggtttatcagcagtctcatcccgcttctcatgagtgct
ggactgctagtgtttgcgcttaagatggggaacctgcttccctacagtgaccctggtgtg
gtcttcctctttttgggctccttcgctgtggtcactatcatgcagtgtttcctaatcagc
acagcattttcccgggcaaacctggctgcagcatgcggtggaataatctacttcacactc
tatctgccctacgtgctgtgtgtggcctgggaggattacgtcggtcttcccactaaagtt
attgctagtatactctctccagtggcctttgggtttggctgtgagtactttgccctcttt
gaagagcagggagtggggatccagtggagcaacctcatctctagcccaatggaaggggat
gactacagtctcactactgccattatcctgatgtactttgacgccttcctctatggtgtc
atgacctggtacattgaagctgtgtttcctggtcagtatggcattcccagaccatggtac
ttcccattcaccaagtcctactggtttggagaaggagagcaaaatcaggcacccacaata
cagggcaagaaggcaaatgcaggagctgtgtgtattgaggaagagcccactcatcttgac
ctgggggtgtatattaagaacttggtgaaggtctatcggaatggcaaaaagcttgctgtg
gacgacctgacactgggattctacgagggtcagattacatcctttctggggcacaacgga
gcaggaaaaactaccaccatgtccatcctgactggtttgtttccaccaacatttggtaca
gcgtacatcatgggcaaagacatccggtcagagctaagtgctatccgtcagagccttgga
gtttgccctcagcacaacgtcctcttcagcatgctgacggtagaggagcacatctggttc
tatgcacgacttaaaggcctttctgaaaagaaggtgaaggccgagatggatcagatcttg
tatgatactggtctgccacacaaacgcaagtccaaaaccagtgagctctctggtggcatg
cagaggaaactttcagtggcccttgcatttgttggagactcaaaggttgtcattctggat
gagccaactgctggggtggacccttatgctcgcaggggcatttgggacctcctgctgaaa
tatcgtgcaggccgaaccatcatcctttccactcatcacatggacgaagcagacatcttg
ggtgatcgtattgccatcatctctcatgggaagctatgctgcgtgggctcctctctcttc
ctaaaaactcacctgggaactggatactacttgacactggtaaagaaggaaccagaagct
tctctgagttccagcagaaactccaccaccactgagtcttatatcaagaaggatgaagaa
gacacagagagcagttcagatgctggtttgggcagcgaccatgagagcgatgctgccaca
gctattggtacctcatggactgattcacctgttgttcctgcagacatcgctctaatctca
ggtctgattcttaagcacgtccctaacgcacgcatggtggaggatctgggacatgagatc
acctacatcctgccttatgaatcggctaaagatggtgcctttgttgatctcttacacgat
ttggatgaccaccttgctgatttgggcatctcgagttatggtgtttcagacaccacactt
gaagagattttcctgaaagtggcagaggacagtggggttgatactgaaatgatgtcagat
ggcacactccctatacgcaggcgcagacgacatgcttttggagctgatcaccagagctgc
cttaaacccttgactgaggatgacaactttgactgcaacgaatctgatgctgacccagag
tccagagaaactgattacttaagcaacactgacggtaaaggttcataccaaatccagggc
tggaccctgaagagacagcagtttgtggccttgttgtggaaaagattcctgtatgctcgt
cgttccaggaaaggcttctttgcccagatcgttctgcctgctgtatttgtgtgcatcgcc
ctggtattcagtcttattgtccccccctttggaaaataccccagtcttgccctgcagcca
tggatgtatgaggatcaagttacctttatcagcaacgatgcacctgaagatgccagcact
caaaaattactctccgcactaacagacgaccctggctttggaacacgctgcatggaagga
gaaccaataccaaatgctccctgtacaatgggtgatgaggattggtccataccagaggtc
acagaaaatgtttgggaggtgttcaggaatgaaaactggaccatggaaaacccatcgcca
gagtgtgagtgcagctgtaatggcaagaagaagatgctcccagaatgccctgctggtgct
ggaggccttccacctccgcagataaagatcagtgacagggacacacttcaaaacctgact
ggaagaaacatctcagactacttggtgaagacttatgcggaaattattggcaaaagtttg
aagaacaaggtctgggtgaatgagttcagatatggagggttctcactgggtgccagaagc
acgcaggttctcccgcctgctgaggagattgacgatgccatttctcgagtgagggaaata
ttccaactgaagaagaactcagggacagcagctgatcgctttctaaacagtctctcttct
ttcatcaatggcctagacaccaaaaataatgtgaagatctggttcaataacaagggctgg
cacagcatcggttccttcctcaacgtgatgaacaatggtattctgcgggccaatttgcct
ccagggaaggacccaagaaaatatggcatcacagcctacaatcaccctctgaaccttacc
aaagagcagatctcccaggtggcactggtgacaacctcagtggacgtgctggtgtctata
tgcgttatcttcgccatgtcatttgttcctgctagctttgttgtctttctcattcaagaa
cgtgtgaacaaggccaagcatatgcagttcatcagtggagtacagccatatctttactgg
ctggccaattttatctgggatatgtgcaattacatcgtcccggcaaccctggtcgtaatc
atctttgtgtgcttccaacaaaaagcctacgtgtcttccaccaatctgccagtactcgcc
ctgttgctgcttctgtatggatggtctatcacacctctgatgtacccagcttccttcctg
ttccagatccccagcactgcgtacgttgtccttaccagcgtcaacatactgattgggatc
aacggcagtgtgtccacttttgttctggagttgtttggtggcgataaaattggtggcatc
aatgacatcctgaagaacgtgctcttgatcttccctcacttctgtctgggacgaggcctg
attgacatggtgaagaatcaggccatggctgatgcactggagagatttggagagaaccgt
ttccgctccccattggaatgggacatggtgggtaagaacctgtttgccatggcagtggaa
ggagtggtcttctttattattactgtcctcatccagtaccgcttctttatcaaacccaga
gctcttcgccctaagctgagtccgattggagaggaagatgaagatgtggctagggaacgg
cagaggatcatcagtggagcagggcaaggagacatccttgagctccgacagctcacgaag
gtgtatgagaggaagaagaaacctgctgtggataggctttgtgtgggaattcctccagga
gagtgctttggtctgctcggagtgaatggagctggaaagacaagtacctttaaaatgctg
acaggagactctgcagtcaccagtggagaagcattcctagctaggaagagtatactcagg
gaaatagatgaggtgcatcagaacatgggctactgccctcagtttgatgccatcaacgac
ctgctgacaggcagagagcacctggagttctatgccatcctacgtggtgttccagagggg
gaagtgtgtgaggtggctgagtggggcatccgcaagctgggcctaataaaatatgccgat
aaagctgctggaagctacagtgggggcaacatgcgcaaactctctacagccatggccctc
atcggaggcccaccagtggtctttctggacgaacccaccactggtatggaccccaaggcc
cgcagagctctgtggaactgcatccacagcatcatcaaggcagggcgctctgtcgtgctg
acgtcacacagcatggaagagtgtgaggccctgtgcaccagaatggccattatggtaaat
ggccgatttaggtgtctaggaagtgtccagcatctaaaaaacaggtttggtgatggatac
accatcatcctgagggtggcaggacccgaaccagacctgcagcccgtaatgaagtttatt
gagatcgagctgcctggcagtatactgaaggagaaacacagaaacatgctgcagtaccag
ctgccctcatccctgtcctctctcgctcacatcttcagcattcttgcaaagcacaaagat
tttctccagatagaggattactctgtttcccagaccacactggaccaggtgtttgttaac
tttgccaaggatcaaagtgacgatcactgtgaccactccatacggcgtaaagaggcaatc
gtaaacattcctctgctcagcctgccagcaactttaaaggatgaggagaaccacaaggag
agcttcgtgtga
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integrated database retrieval system
