Ictalurus furcatus (blue catfish): 128619035
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Entry
128619035 CDS
T09387
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128619035
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128619035
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128619035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128619035
NCBI-ProteinID:
XP_053498851
LinkDB
All DBs
Position
15:7688288..7779231
Genome browser
AA seq
1674 aa
AA seq
DB search
MHLGAQRTRGGRVAQTRALLLLLSVCFTTLSAEEHSQTQGVDLILQLGLSSRRDVTHSSW
MMTSPPFISSLPSLAILPPGVGVTLDRDAMIEAPVVTVLPAGVGKEFSLIVSLNAKHATN
AFLFSVRDGMDRLQFGLQLLPNRVVVYTGDKASIYFSYEVQDGRWHSFALAVRPRSVSFF
AQCGGLHYSEETLTRPRMVVSNGRVAIGRISSRAAQFEGSLCQLEIYPSAQVAAHYCDYV
KKNCRLADTFRSPFPSTSPSLTSSVTSPTPSEKRTRNPANSTLRNSMDKISPTTASFWNT
LRSSTTRTVSPSPSPFRPTHSPDLRTTTSTPPSEGRPYEENNTEDQQLLGRPRATRATPN
LTSHHRKNQLSNGNGSQLPDLSEPQMKLNGATLYRQQGYNNQLERLEEYGEERTYDSGVY
GYDYGFEDGDYFLDYDGFEGLKGDPGPPGSPGPPGLPGPAGKRGPRGPPGPHGIPGPPGL
PGPKGAKGDPGLSPGQATKGEQGERGPPGLPGPKGFPGPEGPKGYPGPPSQPGEQGLPGL
PGMVGAAGYPGRQGLAGPEGNPGSKGVNGFIGPPGAPGAPGIQGERGIPGPVGKNGPKGR
QGVIGDVGERGPPGPDGNQGPVGATGTGGFPGLRGNPGPEGLRGLPGIVGHQGLPGGVGP
PGLKGDKGEPGLRGEPGDYGYQGDKGAAGILGPPGPRGKPGPMGKTGDLGAPGPPGPPGP
EGFPGDIGVPGPNGPPGPKGVQGARGPPGPLGPKGTEGDEGPLGPPGSPGPTGRQGRKGY
IGEPGPEGPKGEVGDQGNVGKSGPPGEEGLPGIPGVAGPPGEKGDRGPAGPLGPPGEKGS
MGYPGLPGGPGDVGPQGPPGLTGPRGTPGIPGTKGRRGPRGADGPPGEPGPEGIKGEKGG
PGLKGATGFVGKAGSPGKRGSPGPPGVAGPPGSSGERGPHGEPGPKGPPGELGADGEQGS
EGPPGPEGEQGPAGEPGSKGEIGPAGTEGEQGQEGVRGPPGPAGEDGPQGKDGPKGEQGD
HGAMGEPGERSEVGDPGPPGPPGDAGVKGFPGPEGKQGSPGKRGRHGKKGDHGLAGQPGE
MGSAGETGQEGERGLKGARGTRGPPGQAGVMGPQGEPGMEGYTGHGGKPGPPGPPGPKGE
KGYPGEDSKTPGPPGPLGEPGPPGERGDRGDPGDNGYQGHVGVTGARGSVGQQGAPGLPG
LSGETGPKGDKGTQGQPGKNGAQGQTGSPGPEGPVGLPGPKGMMGYPGPDGPPGLPGLPG
LPGLIGQTGQHGTSGIEGSAGLPGPRGEVGLPGPIGDRGEPGIQGERGLSGDRGPAGAKG
LQGAPGDQGRKGDPGVKGQLGEVGDPGILGLQGFPGPKGPSGDLGFAGVPGPKGPLGTLG
FTGPVGPVGMIGPVGRPGLQGPKGGAGEMGPQGPRGTPGPRGPPGAPGPPRRVGARTTAV
EYDTPVREGYQNAEASVSVQNAEVLRTLHYLSAIVSDIRTPAGTRENPARFCKDLLDCKP
KMADGMFWIDPNLGCSSDAIQVFCNFTAGGQTCLIPLATDKVALGVSKVQMKFLHLLSVE
ATQSISLHCYSEPDTTSSSSITSSIFSSITTSSTQMPGNVRFYGWNGQVLERSSIPHHVL
QDNCGVRDGQWHHSRFLLHTQDPTLLPVVDVQGFLPRSTGPEQRHLEVGHVCFL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccaacggacaaggggcggccgcgttgcacaaacgagagccctcctt
ctgctcctgtcagtatgtttcactacactatctgcagaagaacattcacaaactcaaggt
gtagatcttattctccagctgggcctgtccagccgcagagatgtcacccactcctcttgg
atgatgacctcacctccgtttatttcttccctcccatctctcgctatccttccccctggg
gttggggtgactctggaccgtgatgccatgattgaagcccctgtagtgactgtccttcct
gcaggcgtggggaaggagttttccctgatagtgagcctcaacgccaagcatgccaccaat
gccttcctgttcagtgtgcgggatggaatggaccggctccagtttggtttgcagcttctg
cccaatcgggtggtggtgtacacaggtgacaaggcatccatctacttcagctatgaagtg
caggacggacggtggcactcgtttgctctggcagtgcgtccacgctctgtgtcctttttt
gcccaatgtggggggctacactacagtgaagagacactgaccaggccacgaatggtggtc
tcaaatggccgggtggccatcggaaggataagctccagggcggcacagtttgaaggctct
ctatgccagctggagatatatccatcagcgcaggtcgcagcacattactgtgactatgtt
aaaaaaaactgcagactggcagacactttccgatctccattcccttccacatcaccttcc
ctaacgtcctctgtgacctcacctactccttctgaaaaacgcacgcgaaacccagccaac
tccacactcaggaactctatggacaaaattagtcctacaactgcatccttttggaataca
ctgagatcaagtaccactcggactgttagtccatctccaagccctttcaggccaacgcac
tccccagatcttagaactactacgagcacccctccaagtgaaggtagaccctacgaggag
aacaacactgaggatcagcagctgcttggaagaccccgtgccactcgggccactccgaac
ctgacctctcaccacaggaagaaccagctgagtaacggcaatggctcccaacttccagat
ctctcagagcctcaaatgaagctgaacggtgcgaccttatacaggcagcaagggtacaac
aaccagctggaacgtcttgaggaatatggtgaggaacggacatatgactcaggggtatac
ggatacgactatggatttgaggatggagactattttttagactatgatggttttgaaggt
ctgaaaggggatccaggccctccgggttcccccggtccccccggtctccctgggccagct
ggaaagagaggaccacggggtcctcctggtcctcatgggattcccggccctcctggatta
cctggccccaagggtgcgaaaggagaccccgggctgtccccaggtcaggcgacgaaagga
gaacagggtgagagaggaccacctggactaccaggccccaaggggtttccaggtccagag
ggtcccaaaggctatccaggaccaccgagtcagccaggagaacagggtttgccaggattg
ccgggcatggtcggggcagcaggttaccctggcaggcagggactggcaggcccagaggga
aacccaggctctaaaggtgtcaatggttttatcggaccaccaggagcaccaggagcaccg
ggcatacagggagaaagagggataccaggacctgtggggaagaacggacccaaaggaaga
cagggcgtgattggagacgttggggaaaggggtcctcctgggcctgacgggaatcaggga
cctgttggagcaaccggcaccggtggcttcccgggcctcagaggcaaccctgggcctgag
ggacttcgtggactacctggcattgttggacatcagggcctgcctggaggcgtgggacca
cctggattgaaaggtgataagggagaacctggattacgtggggaaccaggagactatggc
taccagggtgacaagggggctgcaggtattcttggaccaccaggcccacgtggaaaaccc
ggaccaatggggaaaacaggtgacctaggtgccccaggaccaccggggcctcctggacct
gagggatttcctggagacatcggggttcctggtcccaacggtcctccaggcccaaagggt
gttcagggagcgaggggacctccagggcctttggggccaaagggaacagagggagatgaa
ggccctttgggtccacctggcagtcctggccccactggcaggcaaggaaggaaaggttat
attggtgagccaggacctgaaggaccaaagggagaagtcggcgaccagggaaacgtcggc
aagagcggccctccaggagaagaaggacttccaggaattccaggcgtggctggcccacct
ggggaaaagggagatcgtggtccagcagggcctttgggtcccccaggagagaagggttca
atgggctatccaggtttgccaggaggtcctggagatgttggcccacaaggcccaccaggt
ctgacgggtccaaggggtactccaggtattcctgggacaaaaggaaggagggggccaaga
ggagccgatggaccacccggagagccaggtccagagggcatcaagggagaaaagggcggc
ccaggcctgaaaggagctacggggtttgttggcaaagcaggaagtccagggaaacgaggc
tctccagggccaccgggtgttgcaggtccacctggaagttctggtgaaagaggacctcat
ggtgaacctggacctaaagggccaccgggggaactgggagcagacggagagcaaggatct
gaggggcctccaggacctgaaggtgaacagggacctgctggagaacctggatccaagggt
gaaatcggacctgcgggtactgaaggagagcaagggcaagaaggcgtaagggggcctcca
ggtccagcaggagaagatggacctcaaggaaaggatgggccaaagggtgaacaaggtgac
cacggtgctatgggagaacccggtgaaaggagcgaggtcggtgaccccggacctccagga
ccacctggagacgccggcgtaaaaggattcccgggaccagaaggaaaacaaggttcacca
ggcaaacgtggacgtcatggaaagaagggcgaccacggtctggcgggacagccaggtgag
atgggttccgcaggcgaaactggacaagaaggagagcgaggactaaaaggagctcgtgga
accagaggaccaccgggtcaagccggagttatgggaccgcagggggaaccaggaatggaa
gggtacacaggtcatggtggcaagcccggtccacctggccccccaggacctaaaggtgaa
aagggttatccaggagaggacagtaagactccaggaccgccggggcccttaggtgaacca
ggtcctccaggtgagagaggtgaccgaggagacccaggagacaacggatatcagggtcac
gttggggtcaccggtgctcgagggtcagtgggacagcagggagcgccaggattacctgga
ctgtctggagaaacaggacctaaaggagataaaggaactcagggacagccaggaaagaat
ggtgctcagggtcagacgggttctcctggtccagagggacctgtaggtttgccagggccc
aaggggatgatgggatatccaggacctgatggtcctccaggcttgcccgggctaccagga
ctgcctggtttgattggtcaaacaggtcagcatggcacgtcgggcatcgaggggagtgcg
ggacttcctggaccgcgtggtgaggtcgggctgcctggtccgattggagacagaggagag
cctgggatacagggagagaggggtttgtcaggcgacagggggccagcaggtgctaagggc
ttgcagggtgcccccggagaccagggcagaaagggcgatcctggggtcaaaggtcaactg
ggggaagttggagacccaggcatattaggacttcagggtttcccaggaccgaagggtccg
agtggagatttaggctttgctggagttccaggacccaaaggaccgctgggtacactgggt
ttcacaggtcctgttggtccagtcgggatgatcggcccggtcggaagacctggtctgcag
ggtcctaaaggaggagcaggcgagatgggaccccaggggccacgcggtactccaggaccg
aggggtcctcctggtgctccaggaccaccgagacgcgtgggagccaggacgacggctgtg
gaatacgacacaccggtgcgtgagggctaccagaacgccgaggcatccgtgtccgtgcag
aacgccgaggtcctcaggactctgcactacctgagcgccattgtctctgacatcaggacc
ccggcaggcacccgggaaaaccccgcccgcttctgcaaagacctgctggactgcaaaccc
aagatggccgacggaatgttctggatcgacccgaacctcggctgctcgtctgacgccatc
caggtgttctgtaacttcacagctggaggccagacttgccttatacccctcgctacagat
aaggtggcacttggggtcagtaaggttcagatgaagtttctgcacttgctcagcgttgaa
gccactcagtccatctcgctccactgctacagcgagccagataccacctcctcctcctcc
atcacctcctccattttctcctccatcaccacctcctccacccagatgcctggtaacgtg
cgcttctatggttggaacggccaggtgctcgagaggagctccataccacatcatgtgctt
caggacaactgtggggtacgtgacggccaatggcaccactctcggttcctgctgcacact
caggacccgacgctgctccctgtggtggacgtgcagggtttcctgccccggagcacgggg
cctgagcagcgccacctggaggtcggacatgtctgcttcctgtga
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