Ictalurus furcatus (blue catfish): 128620181
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Entry
128620181 CDS
T09387
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128620181 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ifu01009
]
128620181 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ifu04515
]
128620181 (pcdh1a)
Protein phosphatases and associated proteins [BR:
ifu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128620181 (pcdh1a)
Cell adhesion molecules [BR:
ifu04515
]
Cadherins
Protocadherins
128620181 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
He_PIG
Fibulin_C
RET_CLD1
PDGLE
Motif
Other DBs
NCBI-GeneID:
128620181
NCBI-ProteinID:
XP_053500886
LinkDB
All DBs
Position
16:complement(3724739..3736249)
Genome browser
AA seq
1085 aa
AA seq
DB search
MIFFFFTWIYCLPCTQNTDQLYPGICNVEISISVLLIMFMRYTLVYDSTYFFFLILYVFQ
TKVLPPWHIMDFSVGLYLLWALVLNFGRGTLGGILYRMREEQPPSTLIGSLAADQGLPDS
GHLYKLEVGAPYLRVDGKTGEIFTTEIPIDRETLKDCRMKGKPCFLEFEVSVTDLIQNQS
PRLIEGRIEVLDINDNTPQFPSPVLTLSVQENTHMGATFSIPLATDKDTERNGVADYTLT
AGPEAVALFGLQVADDRGEKLPQLIVMGNLDRELKDSYDLTIKVVDGGSPPRYSSALLRV
VITDANDNAPKFEKSSYEAEVSENSPVGHSVLQVKANDSDLGPNGEIEYIIHQAGDPVPK
LLQIDRSTGIIYVKGSLDREEINSLKFHVIARDRGPSPKSSTTYVSVEVTDQNDNAPAVE
IRGIGLRTHSDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPAGDS
SIDNKKKYFLQTTTPLDFERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDINDNSPIFSP
PVFEIEFAEENQPGEKVLDVIAVDADSGTNAELIYTIVADSSTRGLFEIDPSTGEVRARS
PLDREHKERYEFRVTASDKGVPSHRGTATVVIKVLDRNDNDPKFMLSSYSFSVLENMPPL
SPVGMVTVLDMDKGENSQVQLSVEPDVGKFVVQNGTGTILSSISFDREKESSYSFRLKAV
DGGEPPRSSYVGVTINVLDENDNAPVVTKPSNSSFKRLSPLTAPDSVVEVVEAEDIDYGS
NAELVYSIAGGNPHELFYISPSDGEIKLTKELTRKHGGLHRLVVKVSDRGKPSRHAISLV
HIYVNETISNVSLVEGLVGHSLYTPLDTDIAGDPDYGLAVQRSNILYGSLAGVAGVVTVI
IVVVFIRHRLQRETKSGYQAGKKETKDLYAPKQGPKSIKGKKGRKGKPPKSPKPLGEDEE
VSLQKSLKFNIDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQ
AVQELPATNTFVGTERDDNSTGSDQYSDYSYKTSQPKYSTKSVSVYKCNCLMILINPTHE
FTLVD
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgattttttttttttttacctggatttactgtttaccgtgtacacaaaatacagatcag
ttatatcctggaatttgtaatgttgaaatatctatttcagtgctgttgataatgtttatg
cgctacacccttgtttatgattcaacctattttttttttctcattctttatgttttccag
actaaggtgctacctccctggcacatcatggacttctcagtgggactgtatctgctatgg
gcattagtgttgaactttgggcgtggcacactgggtggcatactgtaccgtatgcgtgaa
gagcagccgccaagcaccctgataggtagtctggcggctgatcagggcttacctgactct
ggacatctgtacaagctggaggtgggcgccccttacctgcgggtggacggcaaaacaggg
gaaattttcaccactgaaatccccatagacagagagacgctgaaggattgtcggatgaaa
ggaaagccgtgctttctggagtttgaggtatctgtcacggatctcatccagaaccaaagc
ccccggctgattgagggacggatcgaggtgcttgacatcaatgataacaccccacagttt
ccctcacctgtcctcacgctctctgtgcaggagaacactcacatgggtgccaccttctcc
atcccgctggccactgacaaagatacagagcgtaatggtgtagctgactatacccttact
gccggaccagaggctgttgcactctttggcttacaagtggcagatgacaggggtgagaaa
ttgcctcagctcattgtgatgggaaacctggacagggagttgaaagactcctatgaccta
accatcaaagtagtggatgggggaagcccacctcgttatagtagtgccttgctgcgagtc
gtcatcactgatgccaatgacaacgcacccaagtttgagaaatcgtcctatgaagcagag
gtttcagaaaacagtcctgttggacactctgtgttacaggtcaaagccaatgactcagat
ctgggtccaaatggtgaaatcgaatacatcatccatcaagccggtgatccagtgccaaag
ctgctacagattgaccgttccacaggcatcatatatgttaaaggctcgttggatcgtgag
gagatcaacagcttaaaatttcatgttattgcacgggacagaggtccctcacctaaaagc
tcaacaacatatgtttctgttgaagtaactgaccagaatgacaatgcaccagctgtggag
atccgtggtattggtcttaggacccatagcgatggggtggcaaacatctcagaggacatg
ccagtgggcactgcggtggcactggtgcaagtgtcagataaggatgagggagaaaatgct
gtggtgacctgtgtggtagcaggggatgttccattccagctccgaccagctggcgattcc
tctattgataacaagaagaagtactttctgcagaccaccacacctctggactttgagcga
gtcagggactaccgggtggagatagtagctgtggactcaggcaacccagctctgtccagc
accaactccctgaaagtccaagtgactgatattaatgacaattctcccatattctcaccc
ccagtgtttgagatagagtttgctgaagagaaccagccgggggagaaggttctcgatgtc
attgccgtagatgcagacagtggcaccaacgcagaactcatctataccattgttgcagac
tcatcaacaagggggctgtttgagattgaccccagcacaggcgaagtacgagcaaggagc
ccacttgatcgtgagcacaaagaacgttatgagttccgtgttactgcatccgacaaaggt
gttcctagccacaggggtactgctactgttgtgatcaaagtactggataggaatgataac
gatcccaagtttatgcttagtagctacagcttctctgtcttggagaacatgccaccactg
agcccagtcggcatggtgactgtattagatatggataagggagaaaattcccaagtgcag
ctctctgtcgaaccagacgtcggaaagtttgtagtccagaatggcacaggaacaatcctc
tcaagtatatcctttgaccgggagaaagaaagcagctacagtttccgactcaaagcagta
gatggaggagaaccccctaggtcatcttatgttggtgtgaccatcaatgtacttgatgag
aatgacaatgcacctgttgtcaccaaaccttccaattcttctttcaaacgtctgtctccc
ctgactgcacctgatagtgttgtcgaggtggtggaggcagaagacatagactacgggtcc
aatgctgagctggtctatagtattgctggggggaacccccatgagctcttctatatatca
ccctctgatggcgagatcaaactaaccaaggaactgactcggaaacatggaggtctgcat
cgcttggtagttaaagtgagtgacaggggtaagccttctcgccatgccatttccttggtg
cacatttatgtcaatgagaccatttccaatgtcagcctggtggagggtctagtgggacat
agcttatacactccactggacacagacattgcaggtgaccctgactatggtctagctgtt
cagagaagcaacatcctatatggtagtttggctggtgtggcaggagttgtcactgtaatc
atagtggtagtcttcatcagacatcgcctccagagagaaaccaagagcggctatcaagct
ggcaaaaaggagaccaaggacttgtatgcacccaaacaaggaccaaaaagcattaagggt
aaaaaaggaagaaagggaaagcctccaaaatcacccaaacctcttggagaagatgaagag
gtcagtctccaaaagagtctgaagttcaacattgatggggttaatgacagccctaggatc
cacctacccttgacctacccacctggcagccctgacttgggcaggcattaccgttcaaat
tcaccgttgccctccattcagcttcaggcccagtctccatctgcttcccagaagcatcag
gctgtccaggagctccccgccaccaatacctttgtgggaacagaacgagatgacaactct
accggctctgaccagtactcggattacagctacaagaccagtcagccaaaatacagcaca
aaatctgtaagtgtgtacaaatgtaattgtctgatgatattaattaatcctacccatgaa
tttactttggtagattag
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integrated database retrieval system
