Ictalurus furcatus (blue catfish): 128620596
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Entry
128620596 CDS
T09387
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ifu03009
]
128620596 (ddx55)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128620596 (ddx55)
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
Pre-60S particles
Helicases
128620596 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Helicase_C_2
SBF_like
Cas3-like_C_2
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
128620596
NCBI-ProteinID:
XP_053501760
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Position
16:6935267..6952909
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AA seq
607 aa
AA seq
DB search
MKRSNMESISDGKWASLPVKLHESIHLTLKKLGFIYMTPVQSACIPLFMSNKDVAAEAVT
GSGKTLAFVIPLLEILTKREEKLKKMQVGALIITPTRELALQISEVVGQFLEEFPQFRQI
LLIGGSNPIEDVEKFKTSGANIVIGTPGRLEDMFRRKADGLDLASCVKSLDVLVLDEADR
LLDMGFEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATSM
QKTPSRLSNYYTICRTEDKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGRVLEVFIKNVT
ILCIHGKMKDKRSKIFSEFRELKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASSFVHR
CGRTARIGNRGNALVFLLPMEESYISFLSINQKCPLQKYPPVKDVVDVLPKLKSLALGDR
AVFERGMKAFVSFVQAYAKHECSLIFRLKDLNFAALARGFALLRMPKMPELRGKTFPGFE
EITDTDSIRFKDKNREKHRQKSLQEKKEKQKQALAQKKNFIKNKAWSKQKSKKDKRRKVV
AKRKMNEGSDVDDEDIDELLSDTRLLKKLKKGKISEEDFDKQMSTERNSKHNRAGPSHED
GAEGGSE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcagcaatatggagagtataagcgatggaaagtgggctagtttaccggtgaaa
cttcacgagagcatacatttgaccttgaagaagctggggtttatttatatgactccggtt
cagtcagcatgcatccctcttttcatgagcaataaagatgttgcagccgaagcggtcaca
ggcagtgggaagactcttgcttttgtcattcctctgctagaaatcctcacgaaacgcgag
gagaagctgaagaaaatgcaagtcggtgctttgatcatcacaccgacccgagagctggca
ctccagatcagtgaagttgtgggccagtttcttgaggaatttcctcagttcaggcagatt
cttttaattggtggaagcaaccccattgaagatgtagaaaagttcaagaccagtggagcc
aacatcgtgattggaacccctgggaggctagaggacatgttcaggaggaaagctgatggc
ctcgacttggccagctgtgtgaagtctttagacgtgcttgttctagatgaagccgacaga
ctgctggacatgggctttgaagctagcctgaacactattttgggctatttgcccaagcag
aggcgcacagggcttttctcagcaacacagactcaggagctggagaagctggtgagggct
ggcctccgaaacccggtccggatcacggtgaaggagaaaggagtggcagctacaagcatg
cagaagactccatcgaggcttagtaattactacacaatctgtagaacagaagacaagttt
aacacgctggtggctttcctgagacagcacaaacatgagaagcagcttgtgttcttcagc
acatgcgcctgtgtggagtattttggaagagtgctggaggtctttatcaaaaacgtcacc
attctttgtatccatggtaagatgaaggacaagaggagcaagatcttctccgagtttcgg
gaattaaagagcgggatactcgtgtgcactgatgtgatggcaagaggcatcgacatcccg
gatgtgaactgggtgctacagtacgatcctccaagcagcgcaagttcttttgtgcatcga
tgtggccgaaccgctcgtatcggaaaccgaggcaatgctctagtctttctcctgccaatg
gaggaatcttacatcagtttcctgtctatcaatcaaaaatgtcccctccagaagtatcct
cctgtgaaggacgtagtggacgtgttgcccaaactgaaatctcttgctcttggggacagg
gctgtatttgagagaggaatgaaggcgttcgtctcatttgtccaggcttatgcaaagcac
gagtgcagcctgatattccgactcaaagatctgaactttgccgctttagctcgaggcttc
gctcttcttcgtatgcccaagatgcccgagttgaggggcaaaacattccccggcttcgaa
gagatcacggacacagactcgatccgtttcaaggacaagaaccgagagaaacatcggcag
aaatcgttacaggagaaaaaggaaaagcaaaagcaggcactggcccaaaaaaagaacttc
ataaagaacaaagcctggtccaagcagaaatccaagaaggataagaggaggaaggtggtt
gccaaaaggaagatgaatgagggatcagacgtggatgatgaggacattgacgagcttttg
agcgacacacgtctactgaagaagctcaagaagggaaagattagcgaggaagactttgat
aagcaaatgagtacagaaagaaattcaaagcataacagagcaggtccctctcatgaggat
ggcgcagaaggagggagtgaatga
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