Ictalurus furcatus (blue catfish): 128621111
Help
Entry
128621111 CDS
T09387
Symbol
brip1
Name
(RefSeq) LOW QUALITY PROTEIN: Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03440
Homologous recombination
ifu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128621111 (brip1)
03460 Fanconi anemia pathway
128621111 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128621111 (brip1)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128621111 (brip1)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
128621111 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
128621111 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
128621111
NCBI-ProteinID:
XP_053502577
LinkDB
All DBs
Position
17:13142292..13180194
Genome browser
AA seq
1310 aa
AA seq
DB search
MICRTDVGQKREVGQCFLRAGISCSVWMCLQSACLAQTLSMAADTVEYTIGGVKINFPCK
AYPSQLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSALAWQQAQYAKSDQEGGSPSC
DVKKPFVTTPCQCVCHNRARCSSTSFGTTASKPTVIDLTGENTAAQVITPPRAEENQAKR
STLSSRLSEKFQASLNTQGEPSDEDFKPDKKRIRAPAADQKQSRKRRCFEKGVVFEEEEE
EEEEEVERANPGAENWTVELSRQAKPEGSLPPAECCSPVPCSLCACASLAEGQRAGEKVK
EKDKESNGKKAVPKIFFGTRTHKQITQIARELKRTLYSTVPMTILSSRDHTCVHPEVVPH
ANRNERCKELLKAKNGQSCRFYHNVHKMREQRSLQWVHGLHQAWDIEELVSLGNKLRSCA
YYAARELMQDACIVFCPYNYLLDPLIRESMDINLKGQIVVLDEAHNIEDCARESASYTLN
QAQLREAREDFEAMVTYNIRRNHHEPLLAFCCSLLNWIQESSSILQDRDYESAYKVWTGK
EVLDIFHGLGITADTFPVLQKHFEAVLEKEERVGLVNGREDTVEVPTISSNTQTVLKSLF
MVLGFLFRQNCRFADDYRVALQQSYVWTTQEDVPDAQGFFARPRRRRQAVRTKTLVHTLS
FWCLNPAVAFSDLSTVVHSIVLTSGTLSPMTSFSSELGLKFSIQLEASHVISKSQVWVGT
IGAGPQGRRLCATFQHAETFTFQDEVGALLLKVCQTVSRGVLCFLPSYKMLDKLRDRWMN
TGLWEKLEERKAVIAEPRGGAKSDFDELLQTYYNAIRQSGARDGALLIAVCRGKVSEGLD
FTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGGRWYEIQAYRALNQALG
RCIRHRNDWGALILVDDRFRTNPNKYITGLSKWVRQLVKHHDSFTSAMQSLGSFSQSQQE
QVESHTEQLSQTTHESPRTRSSALQSPPELPKLHQCLSSEGQITVPVVNPSEAGDQKPSQ
LHSESLIPQCNVPKILPKQQTIPTIFTSTPVSSRFRTPIFQSKDSRKDPDQCVNSAVINK
DTVSAPDQAVKDQTEVVPENKPNEIPPDPPLQPLALSPVETPPYCISNQETSVAGPEDAE
EEDQSIFYTPELFEGEDEESAAAARGEDERSAMTATEETPLKMEQLLCPIGKMADGQPEE
LFRSETGQTRTCAGSSDVKGASVYPDRDSVSPNRDCVLSESVAEQAGVSCCISSEDRATQ
QQQSSSSSSSSSKSRRLSRSRQKASNREAGKXTTYFVSQGSQPQVIAIDD
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgatttgtagaacagacgttggtcagaaacgggaagtcgggcagtgttttctgcgggcg
ggaatttcatgttcagtttggatgtgtttacagagtgcatgtctcgcacagacactcagc
atggctgcggatacagtagagtacaccataggaggagtgaagataaacttcccctgcaaa
gcatatccctctcaacttgccatgatgaactctattgtccgtggcctgaaccatgggcaa
cactgcttattggaaagccctactggcagtgggaagagcctcgcgctgctctgctcagcc
ttggcatggcagcaggcgcagtatgccaagtcagaccaggagggaggaagcccatcatgt
gatgtgaaaaagccatttgttactaccccatgtcagtgtgtgtgccacaacagagctcgt
tgctcatctacttcctttggcactacagcgtccaaaccaactgtgattgaccttactgga
gaaaatactgctgcacaagtcatcacacctccgagagcggaggaaaatcaagccaagaga
tccactctgtcatccaggctttctgagaaatttcaggcttccctcaatacacagggagaa
ccaagtgatgaggactttaagcctgacaagaagcgcattcgggcacctgctgctgatcag
aagcaaagcaggaagcgaagatgttttgaaaaaggtgtggtgtttgaggaggaggaggag
gaggaggaggaggaagtcgaaagggctaatcctggggctgagaactggactgtagagttg
agcaggcaagccaaacctgaaggcagcctgccacctgctgaatgctgttctccagtacct
tgttccctgtgtgcttgtgcaagcctcgcagaagggcagagggcaggtgaaaaagtcaag
gaaaaagacaaggaaagtaatgggaagaaagctgtccccaaaattttctttggcacacgt
acgcataaacagatcacccaaattgcacgagagctgaagcggacgctgtactccactgtg
cccatgaccatcctgtccagccgagaccatacgtgtgtccaccctgaagtggtaccccac
gccaaccgcaatgaacgctgcaaggagctactcaaggccaagaatggccagtcatgccga
ttctaccacaatgtgcataagatgcgggagcagaggtctttgcagtgggtgcatgggctg
caccaagcctgggacatagaagagctggtcagtctgggcaataagctacgctcctgtgcc
tactatgcagcccgggaactcatgcaggatgcttgcattgttttttgcccgtacaactac
ttgctggacccccttatccgggagagtatggacatcaatctaaaggggcagattgtggtg
ctggatgaggctcataacattgaggattgcgcccgcgagtctgccagctataccctaaac
caggctcagctgcgggaggcccgtgaggattttgaggccatggtgacgtataacatccgc
cggaatcaccatgagcctcttctggccttttgctgcagcctgctcaactggatacaagaa
agctccagtattttgcaagacagggactatgagtctgcctataaggtgtggactgggaag
gaagttctggacatcttccatggtcttggcataacagctgacacgtttcctgtgcttcag
aagcattttgaggcagtgctggagaaggaagaacgggtcgggctggtgaatgggagagag
gacacagtagaggttcccaccatcagctccaacactcagactgtgctcaagagccttttt
atggtgttgggatttctgtttagacaaaactgcaggtttgcagatgattaccgtgtggct
ctgcagcagagttatgtttggactacccaggaggatgtgcctgatgcccagggctttttt
gcccggccacgccgtcgccgccaggctgtccgcactaaaacccttgtgcataccctcagc
ttctggtgtcttaatcctgctgtggcattctctgatctgagcacagtagtacacagtata
gtgctcacttctggtaccctctcacccatgacgtccttctcttctgagctgggcctcaaa
ttctctatccagctggaggccagccatgtcatcagcaaatctcaggtgtgggttggcact
attggagccggtcctcagggtcgtaggctatgcgccacattccagcatgccgagaccttc
accttccaggatgaggtgggggcactgctgctgaaagtgtgccagacggtgagcagaggc
gttctctgcttcctgccatcctacaagatgctggataagctgagggatcgctggatgaac
acaggcttgtgggagaagctggaggagcggaaagcagtgattgcagagccacgtggagga
gccaagagtgactttgatgagctgctacaaacgtactacaatgccatcagacaaagtgga
gcccgagatggggcacttctgattgcagtttgcagagggaaagtgagtgagggactggat
tttactgatgacaatgccagagcagtggtcacaattggcattcccttccccaacatcaaa
gacttgcaggttgaattgaagatgaaatacaatgaccagcactgtaaatccagaggcctt
cttcctggaggccgatggtatgagatccaggcttaccgggccctaaatcaggctttggga
aggtgtattcggcatagaaatgactggggtgcacttattttagtggacgaccgttttaga
accaaccccaacaagtatatcacaggcctgtccaagtgggtgcgtcagctggtgaagcat
catgacagctttactagcgccatgcagtctttggggtccttctcccagagccagcaagaa
caagtagagagccacactgagcagctttctcagactacccacgagtcgcccaggactcgg
tcatctgctctacagtcccctcctgagcttccaaaactgcaccaatgcctgagctctgag
ggtcagattaccgttcctgtcgtcaacccttcggaagcaggtgaccagaagccttcacag
cttcattcagaatcgctaattcctcagtgtaatgtgcctaaaatcctgccaaaacaacaa
acgatacccaccattttcacttccactccagtcagttctcgattcaggacccctatcttc
caatctaaagactccaggaaggacccggaccagtgtgtaaattcagcagtcattaataag
gacaccgtttctgcacctgatcaggcagtgaaagatcagactgaagttgttcctgagaac
aaaccgaatgagattccacctgaccctcctcttcagcctctagccctgtcccctgttgag
acacctccatactgtatttccaatcaggaaacaagtgtagcagggcctgaagatgctgaa
gaggaggaccagagtatcttctacaccccagagctgtttgaaggagaagatgaagagtca
gctgcagcagctagaggggaagatgagaggtcagctatgacagctacagaggaaactcct
cttaagatggaacagcttctttgccccatcggaaagatggctgacggacagcctgaggag
ttgttcaggtccgagacgggccaaacgaggacctgtgctggctctagtgatgttaaagga
gcttctgtgtatcctgatagagacagtgtttctcctaacagagactgtgtattgtctgag
agtgtagcagagcaagcaggggtgagttgctgtataagcagtgaggacagggccacacaa
caacaacagagcagcagcagcagcagcagcagcagcaagtcacgtaggctctccaggtcc
aggcaaaaagcatcaaacagagaagcaggtaaanctactacctacttcgtctctcagggg
agtcagccacaggtcattgcaatcgatgactga
DBGET
integrated database retrieval system
