Ictalurus furcatus (blue catfish): 128621195
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Entry
128621195 CDS
T09387
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ifu04515
]
128621195 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
ifu04990
]
128621195 (lrfn1)
Cell adhesion molecules [BR:
ifu04515
]
Immunoglobulin superfamily
SALM family
128621195 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
ifu04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
128621195 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
Ig_3
I-set
LRR_1
fn3
Ig_2
ig
LRR_9
Ig_DSCAM-DSCAML_C
PRIMA1
Sp38
C2-set_3
Motif
Other DBs
NCBI-GeneID:
128621195
NCBI-ProteinID:
XP_053502762
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All DBs
Position
17:1592712..1669233
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AA seq
742 aa
AA seq
DB search
MERFVLCMMLLGVLVRGQQCPGRCICQTISPTLTLLCAKTGLLFVPHTIDRKTVELRLTD
NFITAVRRKDFINMTSLVHLTLSRNTISQIAPHAFVGLKALRALHMDGNRLTDIKNDQLK
GLVNLRHLILGNNQIHHIDPSSFDEFVSTIEDLDLSYNNLRTLPWEAIARMTNINTLTLD
HNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDPKGSSSSSRLTVSFG
GNPLHCNCELLWLRRLTRKDDLETCASPDQLMDKYFWSIQEEEFICEPPLIIKHHVTKPY
VMEGQGVTLKCKAMGDPDPTIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNC
VASNAAGIATAAVEINMIPLPLFVNNTSHMKEADPGLSDITTSTKSGSNDTKQQDKRVVV
DELTSNSAMIHWPSERHIPGIRMYQIQYNSTMDDTLVYRMIPSESKTFRINDLAAGREYE
LCVLAVYDDGITSLTATRVVGCVHFRTAPETGQCQFAQAQFLGGTMIIIIGGVIVASVLV
FIVILMIRYKAYGTADSSKVKGGTSGSIHQSVRAKKQEHVRESPVGTDCHAIALLSLENE
TQGEAKALTPPVNSEVAGLALVPAPPIPPSRRASLGAPPSDDAQTDSSLTGSTMSLCPMG
TSTSDRDRKRTPVAIGLLPGELARARHRFSFDGDYTLFQSHSYPRRARARRHKSSSQLDV
SPPTERRITFSSSTEWMLESTV
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggagcggttcgttttgtgcatgatgctgttgggggttctggtgcgaggacagcagtgc
ccaggccgatgtatctgccagaccatctcgcccaccctgaccttgctttgtgccaagact
ggactcctctttgtgccgcacactattgaccgcaagaccgtagagttgaggctcacggac
aacttcatcacggctgtccgtaggaaggactttataaacatgacgagtctggtgcacctg
acactgtcccgcaataccataagccagattgcacctcatgccttcgttggactcaaagca
ttaagggcgcttcacatggatggcaaccgactgactgatataaagaatgaccagctgaaa
ggtttggtcaaccttcggcatctcatcctgggaaacaaccagatccaccatatcgaccct
tcctccttcgacgagtttgtttccacaattgaggatttggatttgtcttacaacaacctg
aggacgttgccatgggaggctatagccaggatgaccaacatcaacacactaactttggat
cacaatcttattgatcacataggagctggaacattcacgctactcaccaaactggtccgc
ttggacatgacatccaaccgtttgcagaagctgcctccagactccctcttccaacacgct
caagtgctgtctgatcctaaggggtcctctagttcctctaggctgacggtgagttttggt
gggaacccgctccactgtaactgcgagctgctgtggttgcgcaggctcacccgaaaggat
gacctggagacttgcgcctcacctgatcaacttatggacaagtacttctggtccatccag
gaggaggagtttatctgtgaacccccactcattatcaagcaccacgtcactaagccatac
gtgatggaaggccaaggtgtcacgctcaagtgtaaggccatgggtgatccagatcctacc
attcactggcgctttcctgatggaaagctggtccacaataactcacgtactatcctgtat
gacaacggcactctggacatcctgataacaaccttgaaagacagcggggcgttcaactgt
gtcgcctcgaacgccgctggaatcgccacggcagccgtagagataaacatgatcccactg
ccgttgttcgtgaacaacaccagtcacatgaaagaggctgaccctggcctgtctgacatc
accacctccaccaaatctggcagcaatgacaccaagcaacaggacaagagagtagtggtg
gatgagctgacctccaattcagccatgatccactggccttcggagaggcacattcctgga
ataaggatgtaccagatccagtataacagtactatggatgacactttggtctacaggatg
attccctcagagagcaagacattccggatcaacgacctggcggcaggacgtgaatacgag
ctgtgtgtccttgccgtgtacgatgatggcatcacgtccctcactgccacacgtgtggtg
ggctgtgtccactttcgtactgcgcctgagaccggacagtgccagtttgctcaagcgcag
ttcctgggtggcaccatgatcatcatcatcggtggcgtcatcgtggcctctgtgctcgtc
ttcatcgtcatcctgatgatccgatacaaggcctatggcacggccgattcctccaaggtc
aaaggtggaacgtctggaagcatccaccagtcggttcgcgccaagaaacaggagcatgtg
cgcgagtctccggttggtacagattgccatgctattgcgctacttagccttgagaatgag
actcagggggaagcgaaggcactgacacctccggttaactcggaggtggcgggtttggct
cttgtacctgctccacccattccaccatcccgcagggcaagtttaggagccccgccttca
gacgatgcccagacggacagcagcctgacaggctccaccatgtcgctttgccccatgggc
accagcacaagtgacagggacaggaagcggacaccagtggccattgggttgctgcccggt
gagctggcgagggcgaggcaccgcttctcctttgatggggactacacgctcttccagagc
cacagctacccgagacgggcccgtgcccgccgccacaaatccagctcgcagctcgatgtc
tcgcctccgactgaacgccgcatcacgttcagcagcagcactgagtggatgctcgagagc
acagtgtga
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