Ictalurus furcatus (blue catfish): 128621268
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Entry
128621268 CDS
T09387
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128621268 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128621268 (dhx16)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128621268 (dhx16)
Spliceosome [BR:
ifu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128621268 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
128621268
NCBI-ProteinID:
XP_053502884
LinkDB
All DBs
Position
17:complement(18754324..18778237)
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AA seq
1054 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVAQFMIGLAQKSSAPQDFVARLQQTGTIDVDPRVTAFA
QELYNKVPKKQIVEKPSRAIERQVIEMERKNRTYTLLEDSDSDGEASREGGKEKKSREKD
RGKKRKHLRQKRDESPLSSEDDGKNSKSSSLEAKKAQKEDDEEEEWEKEERERLQDLEER
DAFAERVKQKDKDKTRHILERNDKKAYEEAQKRLKVADEDQKRMLPELRKQSRREYLSKR
EQEKLEDLEAEIIDEEYLFTSDNLTEREKKDLEYKKRIRDLARDYKTAGAKEKEERKNRY
YMPEEIRNKNIPQRDMELEFDEGYKEGGGEQGRWEEARVATATLQFGAREERERRIKEEK
EKYQLVLEEDEMINFVSTAITMKGTLSEKDNEPELSQAEKQKQSIQEVRRSLPIFPYRED
LLAAIRDHQILVIEGETGSGKTTQIPQYLLEDGYTQGGMKLGCTQPRRVAAMSVAARVAQ
EMAVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTL
HTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAP
EADYLEACVVSVLQIHVTQAPGDILVFLTGQEEIEACCELLQERCRRLGSKISELIVLPI
YANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGRCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLMLLNVYTQ
WVESGYSTQWCFENFIQFRSMRRARDVREQLEGLMDRIEVELCSANGDNISIRKAVTAGY
FYHTSRLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIESGW
LLEVAPHYYKSKELEDSSSKKMPRKQGKAAEELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggagcagtgggtcagcgacaggctccatgacattctgggcctaagtgac
cgatacgtggcccagtttatgattggcctggcgcagaaatcctccgccccgcaggacttt
gtggcacgtctgcaacagaccggcaccatcgacgttgacccgagagtaactgcgtttgct
caggagttatacaacaaggttccaaagaaacagattgtggaaaaaccatccagagccatc
gagcgccaggtgatcgagatggaacgaaagaacaggacctacactctgttggaggacagt
gacagcgatggagaggcgtccagagaaggagggaaggagaagaagagcagagaaaaggac
agaggaaagaagaggaagcacctcaggcaaaaaagagacgaaagtcccttgtcgagtgag
gacgacggaaagaatagcaaatcgtcttcacttgaagcaaagaaagcccagaaagaagat
gacgaggaagaggagtgggagaaggaggagagagaaagactgcaggacttggaggagagg
gacgcctttgcagaacgtgtaaagcagaaggataaagacaagacgaggcacatactcgag
cgaaatgacaaaaaggcgtacgaggaagcgcagaagcgactgaaggtggctgacgaagat
cagaagagaatgctgcccgagctgcggaaacagtcacggcgtgaatacctgtccaagcgt
gagcaggagaagctggaggacctggaggccgagattatagatgaggagtaccttttcacc
agcgataatctcactgagcgtgagaagaaagacctggaatacaagaaacgaatcagagac
ctggctcgagactataagacagccggcgcaaaggagaaggaagagaggaaaaaccgctac
tacatgcccgaggagatacgtaataaaaatattcctcagagggacatggagttggagttt
gatgagggctacaaagagggtggaggtgagcaggggcgatgggaggaggcacgggtcgcc
acagccactctgcagttcggggccagagaggagcgagagcggcgtataaaggaggagaaa
gagaaataccagctagtgctcgaagaggacgagatgattaattttgtgagcactgctatc
accatgaaaggaacgctctctgaaaaggataacgaacctgagctctctcaggctgaaaag
cagaagcagtccatccaggaagtgagacgcagcctgcccatatttccctacagagaggac
ctcctcgctgccatcagagaccaccagatcctggttattgagggtgagaccggctcaggc
aagacaacgcagattcctcagtacctcctagaggacggttatacccaaggagggatgaag
cttgggtgcacccagcctcgcagagttgcagctatgtctgtagcagccagagtggctcag
gaaatggcagtgaagctggggaatgaggtgggttacagtatacggtttgaggactgcacg
tcagaacgcaccgtgctcaagtacatgactgacggcatgttgttgagagagttcctcacc
gagcccgacttggctagttatagtgtaatcatcattgacgaggctcacgagaggacatta
cacacagacatactgtttgggctgattaaagacatcgcacgtttccggccagacctgaag
gtgctggtggctagcgctactctggacacggagcgtttctcctgtttcttcgacgacgct
cctgtgttcaggatcccaggccgcaggtttcctgtcgacatctactacaccaaggctccc
gaagccgattatctagaggcgtgtgtggtttcggtactacagattcacgtgacgcaggct
cctggagacatccttgtgttcctcacaggacaggaagagattgaggcctgctgtgagctt
ctgcaggagagatgtaggaggcttggctcaaagatctctgagctcattgtgctcccgatc
tatgccaacctgccctcagacatgcaagctaagatttttaaccccacaccacctggagct
cgcaaggttgtggtagccacaaacatcgcagaaacctctctcaccattgacggcatcatc
tatgtgattgaccctggcttctgcaaacagaagagctacaatgcccgaacagggatggag
tctttgattgttacgccatgctcacgggcttcagctaatcagcgggcaggccgagcaggt
cgggtagctgcaggcagatgtttcaggctctatacggcctgggccttcaaacacgagatg
gaggaaaccacagttcctgaaatccagaggaccaacctgggcaacgtggtcctgctcctg
aagagtctgggcataaatgatctgatccattttgacttcatggaccctcctccacatgaa
accctggtgctggcacttgagcaactttacgccctgggtgcccttaaccacctcggagaa
ctcactaagttggggaggaggatggctgagctgcctgtcgaccccatgctgagtaaaatg
atcttggcttctgaacagtataaatgctcagaggaggtgttgactatcgccgccatgttg
tcggtcaacaactccatcttctacaggccaaaagacaaggtggtgcatgcggacaatgcc
cgaatgaactttgtggtgccgggaggagaccatctgatgctcctcaatgtttacactcag
tgggtggagagtggttattccacacagtggtgttttgaaaactttatccagtttcgctcg
atgaggcgggcacgtgacgtgagggagcagctggaggggctgatggacagaatcgaggtg
gaattgtgcagcgctaacggtgacaacatctccatccgcaaggcagtcacagcaggttat
ttctaccacacgtctcgtctcagtaagggcggctacaaaactgtgaagcaccagcagacg
gtgtatgtgcaccccaacagctcactgtttgaggaacagccacgctggctcatctaccat
gagctggtcttcaccaccaaggagttcatgagacaggtgattgagatagaaagcggctgg
ctcttagaggtggctcctcactactacaagagcaaagagctggaagacagcagcagtaag
aaaatgcctcgcaaacagggcaaagctgcggaggagctcggctga
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