Ictalurus furcatus (blue catfish): 128621419
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Entry
128621419 CDS
T09387
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128621419 (ddx1)
03016 Transfer RNA biogenesis [BR:
ifu03016
]
128621419 (ddx1)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128621419 (ddx1)
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128621419 (ddx1)
Transfer RNA biogenesis [BR:
ifu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128621419 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
128621419
NCBI-ProteinID:
XP_053503149
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All DBs
Position
2:complement(9916321..9931993)
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AA seq
740 aa
AA seq
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MAAFSEMGVMPEIAQAVEEMEWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTRAVTKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTVGCYIDLESCQISFSKNGNDLGLAFEIPKNLKNEPFFASCVLKNAELKF
NFGGEPFKNAPKEGFVAVDQAPDGHVVRTTQTGSATVSQVKSSSTAPKALILEPSKELAE
QTLNNVSQCKKYVDNPKLRDLLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQIRFLVLDECDGLLSAGYTDFIMRVYNKIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVSPKKDRFWEKLGKNHIQTDEVHAKDNIRPGAN
TAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEQYLIVQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKKEVRFLICTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTKLKDDGGCTIWYNEKELLG
DIEEHLKCTITQCEPDIKVPLDEFDGKVTYGQRRAAGGGLYKGHVDILAPTVRELANLER
EAQTSFLQLGYLPNQLFKSF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttttctgaaatgggcgtgatgcctgaaatcgctcaggctgttgaagaaatg
gagtggctgcttcccactgacatccaagccgagtccattcccttgatccttggcggagga
gacgttctcatggccgctgagacaggaagtggcaaaactggggctttcagcatcccggtg
atccagattgtgtatgagactctgaaagatcagcaagaggggaagaaaggccgtgctgca
gtgaagacaggaggagcagtgtttaataaatggcagatgaacccatacgaccgaagccca
gcatttgctatcggtccagacgggctttgctgccagagcagagagtttaaggagtggcat
ggctgccgttccacccgggccgtgactaaaggaaagtattactacgaagtctcctgccac
gaccaaggcttgtgcaggatcggttggtccactagtcaggcagctctggaccttggtacg
gacaagtttggcttcggcttcggagggacagggaagaaatcccacaataagcagtttgat
agttatggagaggagttcactatgcacgacaccgtcggatgctacatcgacctggagagt
tgccagatatccttctccaaaaatgggaatgatctgggtttggcgtttgagattcccaag
aacttgaaaaatgagccattcttcgcctcctgtgtgcttaagaatgctgaactgaagttt
aatttcgggggagagcctttcaaaaatgcccccaaagaagggttcgttgctgtggatcaa
gcacccgatggccacgtggtcagaaccactcagactggcagtgccacggtgagtcaggtc
aaatcaagctccactgcccctaaagctctgatcttggagccgtcgaaagaattggccgag
cagaccctcaacaacgtcagccaatgtaagaaatacgtggacaatcccaaactacgagat
ctgctgatcatcggaggcgtggcagccaaagaacagctgtctgttttggaaagcggcgtt
gatatagtggttggcacacccggcaggcttgatgatctcatttccacgggaaaactcgat
ctgtcccaaatccgcttcctggttctggatgagtgtgatggactgctttccgccggatac
accgacttcatcatgagggtctacaacaaaatcccccaggtcacctctgatggaaagaga
ctgcaggtgattgtgtgctcggcaaccctgcactcgttcgacgtgaagaagctgtcggag
aagatcatgcacttccccacgtgggtggacctgaaaggtgaagactccgtgcctgagacg
gtgcatcacgtggtagtgcctgtcagccccaaaaaggacaggttctgggaaaagctgggc
aaaaaccacatccagactgatgaagtgcacgcgaaagacaacataaggcctggagccaac
actgcagagatgtggtccgaggcaatcaaaatcctgaagggcgagtacacgatccgtgca
attaaggagcacaagatggaccaagccatcatcttctgcaggaccaagattgactgcgac
aacatggagcagtacctgatcgtccaaggaggaggtcctgataagaaagggcatcagttc
tcatgtgtctgtcttcacggtgaccgtaagcccaacgagcgcaaatacaacttggagcgg
ttcaagaaaaaggaggtgaggtttttgatttgcacagacgtagcagccagaggaatcgat
gtccacggcgttccatacgtcattaatgtgaccttgccggacgagaaacagaattacgtg
catcgcatcggaagagtgggcagggcggaaaggatgggtctggcaatttctctggttgcc
atggaaaaggagaaggtatggtatcacgtttgtgctaacagaggccgaggctgctataac
accaagttaaaggacgatggaggctgcaccatatggtacaacgagaaagagctgttggga
gatatcgaggaacacctgaagtgcaccattactcaatgcgagccggacatcaaagtgccc
ctagacgaatttgatggcaaggttacttatggccagcgccgagctgctggaggtggtctc
tataagggccatgtggatattttggcacccacggtacgggaacttgctaaccttgagcga
gaggcgcagacatctttcctgcaactgggctatctcccgaatcagctcttcaaatcgttc
tga
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