Ictalurus furcatus (blue catfish): 128622004
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Entry
128622004 CDS
T09387
Symbol
smarce1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128622004 (smarce1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128622004 (smarce1)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128622004 (smarce1)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128622004 (smarce1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128622004 (smarce1)
PBAF complex
128622004 (smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
Sarcoglycan_2
Motif
Other DBs
NCBI-GeneID:
128622004
NCBI-ProteinID:
XP_053504112
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All DBs
Position
2:11875420..11885182
Genome browser
AA seq
437 aa
AA seq
DB search
MSKRPSYAPPPAPAPTTQMPTTPGFVGYNPYSHLAYNNYRLGGNPGGNNRVMNSSGITVP
KPPKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYL
NEYEAEKIEYNDSLKAYHNSPAYLAYVNAKNRAEAALEEESRQRQSRLDKGEPYMSIQPA
EDPDVHVSVCVWLDYDDGFSMKHTAAARFHRNHRLISDILSEVVVPDVRSVVTTARMQVL
KRQVQSLMVHQRKLEAELLQIEDRHQEKKRRFLESTDSFNNELKRLCSLKVEVDMEKLAA
EMAAAEEAARRRAEEREREREKEREREKEREAEAEKTERAPEEDQQGASGPNSSEQNTSS
DSKEQDKPSPMETDEAHADVSEGQQECEERPVEKPEQAESGLEEGASDSNPPLERENSTE
SAPSDTAPEERAPAAPQ
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggccgtcttatgccccgccccctgctccggcccccactacacaaatgccc
accacccctgggtttgtggggtacaacccatacagccatctggcctacaacaactacagg
ctgggaggaaaccccggcggaaacaacagggtaatgaattcctcggggattacggttccc
aagccacccaaaccccccgataagcctctgatgccctacatgcggtacagccggaaggta
agcaggaaggtttgggaccaggtgaaagcctccaaccccgatttgaagctatgggagatt
gggaagatcatcgggggcatgtggagggacctcactgacgaggaaaagcaggattacttg
aacgagtatgaagctgagaagatcgaatataacgactccctgaaggcctaccacaactcc
ccggcgtacctagcatacgtgaatgctaagaaccgcgccgaagcggctctggaggaggag
agcaggcagagacagtctcgtctggataaaggagagccttacatgagcatccagccagct
gaagatcccgatgttcatgtgtccgtgtgtgtgtggctagattatgacgacgggttctct
atgaagcacacagcagcagctcgattccataggaaccaccggctgatcagtgatatcctg
agcgaggtggttgtgcctgacgtccgctcagtggtcactacggcgcgcatgcaagtgctc
aaacgccaggtccagtccctcatggtgcaccagaggaaactggaggcagagctgctgcag
attgaagacaggcatcaggagaagaagaggcggttcctcgagtccaccgattccttcaac
aacgagctcaaacggttgtgcagtctgaaagtggaggtggacatggagaagctggcagcg
gagatggcagcggcagaagaagccgcgagacggagggcggaggagagggaaagggagagg
gagaaggagagagagcgggagaaagagcgagaggcggaggcggagaagaccgagagagca
ccggaggaggatcagcagggagcaagtggaccaaacagcagcgagcagaacaccagcagt
gacagcaaggaacaggacaaaccaagtccaatggagacagacgaggctcatgctgatgtg
tctgagggccagcaggagtgtgaggagcgcccagtggagaagccagagcaagcagagagt
gggttggaggagggggcgagcgacagtaatcctccactagagagagaaaacagcacagag
tctgcaccgtctgacaccgcgccggaagagagagcccctgccgccccacagtaa
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integrated database retrieval system
