Ictalurus furcatus (blue catfish): 128622056
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Entry
128622056 CDS
T09387
Symbol
rbbp6
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ifu04121
]
128622056 (rbbp6)
Enzymes [BR:
ifu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128622056 (rbbp6)
Ubiquitin system [BR:
ifu04121
]
Ubiquitin ligases (E3)
U-box type E3
128622056 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_3
zf-C3HC4_2
zf-CCHC
zf-RING_2
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
128622056
NCBI-ProteinID:
XP_053504232
LinkDB
All DBs
Position
2:12117278..12138532
Genome browser
AA seq
1757 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITVSELKRQIMGREKLKAADCDLQITNAQTKEEYTDD
GALIPKNSSVIIRRIPIGGVKAASKTFLIDRSEPSVGSSKAIDDSPSISLAQLSKTANLA
EANASEEDKIKAMMSQSNHEYDPIHYTKKPVGPPPPNYTCFRCGKSGHYIRNCPTNGQDK
SFEAPQRIKKSTGIPRSFMMEVDDPNIKGAMLTNTGTYAIPTIDAEAYAIGKKEKPPFVP
QEQSSSSDDEDPVPDELLCLICKDLMADAVVIPCCGNSYCDECIRTTLLESEEHVCPTCN
QSDVSPDALIANKFLRQAVNNFRNETGYTKRIRKAAAQSSVPAPQPQPRVQRPVQPLKLL
NSRQQDPLRAHTPPQNPPAAVAPPPAITPPITVTQQSSAMPPEVDASPVAVNNSSSPAVA
LSPPQQPKQDDVVIPKEPETQPTSVILSDSLLPTPVIPKGHHVPVISQPHVHTLPLPIPR
SGPLRPGAPRLPAPRPAWDPSSGRGRPLLNDRHPRTLVPPVQPPPVAPNLYPPSLFPPPQ
HTLPHLPGVVPPQFPMQFPQGQQLPPPFNMPPPGYPPAPTNVPSPWVPPGTQPPLTNPPV
PPIPAAHLLSKEEFYRQQRRLKEEEKSKLEEFTNDFAKELLEYRKIQKERRRSYSRSKSP
YRSSYSGSSYSYSKSRSRSRSPRSYSRSISRSRSRSRSRSRSRSRSRSYSPYSRRGRGRS
RSYRSRSRTPPYHRSRTRSPSYRGRDGGGVSGGVYRSRSRSPIYRAQSPGKKLPPASQVE
DRKYGGRYREIPPYDAKAYYGRVLDQSDPYERERYREWEREYREWYEKYFKNYEGPQGGQ
IRGRGPGGRDPYSPERFPPHRPRDNSPYGRGRREDYPPHGIPPRNRPLTYQERCAEKYGH
LHVNNMAVGRGINKESLKPTKEREPTTSTAVDSKGLKHKKHRKKRKGEEGDMFSHSDSME
ESKKDERKGDSMLMNSSRDDATPVRDEPMDSASVPYKSASDKEKKDKTKSKTEKVKRKTE
SGTQKKEAPAKSTKPAREKDADSGRERVVPTEPAIKRIKEEPPQKTDGSKPHTSEKLMLP
RKLAQSRPVKQHQEQKAVKDEPKDKKEPVKDSTKVEKPPAKDGKPKLEKPIKADEKPVSK
ASEMKGEKRKRKEEKPLVKESEFMPNKSPRVEVAEIANVSPKPKPKVENEKPMQKEKPAI
PSLMDIKPEPVRKIKLNREIGKRIVSTERLSSEESGAGKNKLDQKSKVKLRRQGHGTDRS
GSTLVDYTSTSSTGGSPIKRHEEKPDLKKTVVKTLEEYTNDSSTPAEDEIVMIQVPRSKW
EKEDFESEEDESKVTHASSGNGNASAANTAALATSLSSDKETSKTLHDFNDVQLEAKPSK
DLSGDKEKDTDWERERDRGKERDRSNSDRDASDRKKPGTLNQDRERVQEKGSDHGSERSS
SSQSSRDRQTDRTASTSRKPSSRENNSSLGDKKQDNRSSTKDHTDFRQRDTKSREQLRKK
DSPSPPSKMPTDTTKRVPIASQESRMSEYSPSAERKVLSRESKRASSEDSKADKAVHREG
TRHSDNRIAKDKEQHKVNQSTTLIETRSDAERSDARIKPPSARSMRLSSDLTRETDEAAF
VPDYSESDSDASDPDNKAEPKEKGQESSVSPVHSRSASPTGSHANSSSPSSPGSQDSKKK
KKEKKEKKEKKKHKKHKKHKKHKKHVGNESESDAKGQKHKHKKKKSKKNKDKDKEEKDKD
KEEKDNRTKDGQNEAPV
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgttcattacaagttttcctctaaacttaactacgacacggtgactttcgac
gggctgcacatcaccgtgagcgagttgaagcgccagatcatgggccgggagaagctgaag
gccgcagactgcgacctccagattaccaacgcccagactaaagaagaatacactgatgat
ggcgctctaatccccaaaaattcatctgtcatcatcaggcgtataccaatcggtggtgta
aaggcagccagcaaaacatttcttattgatcgatctgaaccatcagttggatcttcaaaa
gccattgatgattctccctccatttctctggcccagctctctaagacggcgaatcttgca
gaggcaaacgcctcggaagaagacaaaatcaaagcaatgatgtcacagtccaatcacgaa
tacgaccccattcattacacaaagaagccggtgggtcctcctcctccaaattacacctgc
tttcgctgtgggaaaagtggacactacatccgaaactgcccgaccaatgggcaggataaa
agttttgaggcgcctcagaggattaaaaagagcacagggattcctcgcagcttcatgatg
gaagtggacgatccaaatattaaaggcgccatgctgaccaacactggcacttatgccatt
cccaccattgacgctgaagcttatgcaattggaaagaaggagaagccaccctttgtccct
caggaacagtcatcctcttctgatgatgaagatcctgttccagatgagctgctctgtctg
atctgtaaagacctcatggctgatgccgttgtgattccctgctgcggaaacagttactgt
gatgaatgtattcgaacaactttgttggagtcagaggaacacgtttgtcccacctgcaac
cagtctgatgtttcacctgatgctttaattgccaacaaattcctacgtcaagctgtgaac
aacttcaggaatgaaaccggctacaccaagagaattcgcaaagctgctgctcagagttct
gtccccgcaccccagcctcaaccccgcgtccagcgccctgttcagcccctcaaacttcta
aattcccgccagcaggatccgctacgcgctcacacgccaccccagaacccacctgctgcc
gtagccccaccccctgccattacgccacccattactgtcactcagcagtcttcagcgatg
cctcctgaggttgatgcttcacctgtggccgtaaacaatagttcctcccccgcagtggct
ctttctccaccacagcagcccaagcaagatgatgttgtcatacctaaagagccagaaaca
cagccaacatctgtgatattatctgacagtctgcttcctactccagttattccaaaaggg
caccacgttccagtgatcagccagccacatgtgcacacacttcctctccccattcccaga
tcaggaccgttgaggcctggcgccccaagactgccggcaccccggcctgcatgggatccg
tcctcaggccgaggccggcccctccttaatgatcggcacccaaggacactagttcctcca
gtccaacctcctcctgttgctccaaacctttaccctccctctctgttccctccccctcag
catactttgccccacctgcctggtgttgtgcctccacagttcccaatgcagttccctcag
gggcaacaacttcccccccctttcaacatgcctcccccaggttaccctcctgccccaaca
aatgtacccagtccctgggttccaccaggtactcagcccccactcacaaaccctccagta
cccccaataccagcagcacacttactgtccaaggaggagttctatagacagcagcgtcga
ctgaaggaagaggagaagtccaaacttgaggagtttaccaatgactttgccaaagagttg
ttggagtacagaaagatccagaaggagagaaggcggtcctattccaggtcaaagtctcca
tatcgatcctcctacagtggctcatcctactcttactcaaagtccagatcccgttctcga
tctccacgttcttattcacgctccatatcacgatctcgctctagatcgcgttcccgttct
cgttcccgatcccgttctcgttcctactctccatactcccgaagaggcagaggtcgtagc
cgcagttatcgttctagatcacgcacacccccataccatcgctcccgaacacgctctcct
tcctatagagggcgggatggaggaggagtgagtggaggtgtctatcgatctcgctctagg
tcaccaatctatagggcccaaagtcctggcaagaaactgcctccagcttctcaggtagag
gaccgcaaatatggcggaaggtacagagagattcctccatatgatgccaaagcttactat
gggcgagtgcttgatcaaagcgatccctatgaaagggaaaggtatcgcgagtgggagaga
gagtacagagagtggtatgagaagtatttcaagaattacgaggggccacaaggtggtcag
atcagaggccgtggtccaggtggacgagatccatattctccagagcgtttcccacctcac
agacctagagacaactcgccgtatggcaggggtcgccgagaggactatccaccacatggc
atcccaccaagaaatcgtccattgacttatcaggaaaggtgtgcagaaaagtacggccat
cttcatgtcaacaatatggcagttggaagagggataaacaaagaaagcctgaaacccacc
aaagaacgagagccaaccacaagcactgctgtggactctaagggcctgaaacacaagaaa
cataggaaaaaaaggaaaggggaggagggagacatgtttagccattctgactcaatggag
gaatctaagaaagatgaacgtaagggagactcgatgctgatgaactcgagtcgtgatgat
gccacaccagtcagggatgagcccatggatagtgcctctgtgccctacaagagtgcttca
gacaaggagaaaaaagataaaaccaaaagcaagaccgaaaaagttaaacgcaagactgag
agtggtacacaaaagaaagaagctccggcaaaaagcaccaagcctgccagagaaaaggat
gcagattcagggcgggaaagagttgttcccactgaaccagccattaaaaggatcaaagaa
gagcctcctcagaagactgatggaagtaaaccacatacttctgagaaactcatgcttcct
cgcaaattggcccagtctagaccggtcaagcaacaccaagagcaaaaagcagtcaaagat
gaacctaaagataaaaaagaaccagtcaaagactctacaaaagttgagaaacctcctgct
aaagatggaaagcccaagttggaaaagcccatcaaagctgatgagaaacctgtcagcaaa
gcaagtgagatgaagggggaaaaaaggaaacgaaaagaggaaaagccacttgtgaaggag
tcagagtttatgcccaacaaatctccaagggtggaagttgctgagattgccaacgtctcg
cccaagcccaagccgaaggtggagaatgagaagccgatgcagaaggagaagcctgccatt
ccttctctgatggatattaaacctgaacctgttagaaagatcaaactcaatcgtgagatt
ggaaagaggattgtgagtactgagcgactttcttcagaagaatctggtgctgggaagaac
aaactagaccagaagtcaaaggtcaagctacgacgacaggggcatggcacagaccgatct
ggatccacattggttgattacaccagcaccagctcgactggcggtagtcccatcaaaagg
catgaggagaaaccagacctgaagaagactgtggtgaaaacgctggaggaatacaccaat
gatagctcaacacctgctgaggatgaaatagtcatgatccaggtacctcgctccaaatgg
gagaaggaagactttgaatctgaggaagatgaatccaaggtcacacatgcctcttctgga
aatggaaatgcttccgctgctaatacggctgctcttgctacttcactatctagcgacaag
gagactagtaaaacactccatgactttaatgatgttcaacttgaggctaaaccttccaag
gatctgtcaggtgataaggagaaagacactgattgggaaagggagcgtgatagaggcaaa
gaacgagacagaagcaactctgatcgtgatgcctcagacagaaagaaacctggtacgtta
aatcaggaccgggagcgagtacaggagaaaggaagtgaccatggaagtgagagaagctcc
tcatctcagtcttccagagacagacagactgataggactgcatcaacatccaggaagcca
tcaagtagggaaaacaattcaagtcttggtgacaagaaacaggacaaccgcagcagcaca
aaagaccacacagattttcgtcagagagacacgaaatcaagagaacagctcaggaagaaa
gactcaccatctccaccctcaaaaatgccaacagacaccactaaaagggtgcctattgca
tcccaggagtccaggatgtctgaatatagtccttccgcagagaggaaggtattgtctcgg
gagtccaaaagggcttcctctgaggactctaaagcagacaaggcagtacacagagaagga
acaaggcactctgataatcggatcgcaaaggacaaggagcaacacaaagtgaaccaaagc
accacattgatagagaccaggagtgatgctgagagaagtgatgctcgaataaagcctcct
tcagcccgttccatgcgtttgtcctcagacttgacacgggagacagacgaggctgccttt
gtcccagactacagcgagagtgacagcgacgcatcagatccagataacaaggcggagcca
aaggaaaagggacaggaaagcagtgtaagtcctgtccacagtaggagtgctagccccact
ggaagtcatgccaacagcagcagcccaagctcaccaggtagtcaggacagcaagaaaaag
aagaaagagaagaaggagaagaaggagaagaagaagcacaaaaagcacaagaaacacaaa
aaacacaagaagcatgtaggcaacgaatcggagtctgatgccaagggacaaaaacacaag
cataagaaaaagaaatcaaaaaagaataaggacaaggacaaggaggagaaagacaaagat
aaagaggagaaagacaacaggacgaaggatggacaaaacgaagcacctgtttaa
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integrated database retrieval system
