Ictalurus furcatus (blue catfish): 128622070
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Entry
128622070 CDS
T09387
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128622070
03036 Chromosome and associated proteins [BR:
ifu03036
]
128622070
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128622070
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128622070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128622070
NCBI-ProteinID:
XP_053504253
LinkDB
All DBs
Position
2:complement(12152006..12198593)
Genome browser
AA seq
1667 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLDHAGLDPQYENSPWSSGSPCSDSNSNWGKVDSCDKGAWPSITG
SDPELASECMDADSVSSSGSEKNLCMMASGIAGGDSNGNRQGSNQGSHFMVANGSNNVAN
GSVKGPWGSVLSTCQGSGESASDKLAEVGHGKMNAWGTQVPSTNAGVNPSTLNPNANHGA
WPVLQNAGPNSHVPLGSGNGGTNTQRSTIGQMPSMPSVNSKMSWGSLQEKVVESEANGTS
KVLSGQPQNLNTEFNGPNNTTNPMTSSLPNSTGSLQMNERSWPVSTGGSPQLQTTPVSNG
TSISQHGNSEGMNSGSYGTAWGAPPSTTYSEDKCSVPKGQAVGDTVNATLMQSGANGSSV
SAASFKNNNNGMVSCGGGWDSQSTASQNLTWGAGNSMGAAGASCPWGSTSSSSSSSSTSS
NTGTKVSSGEWGALPSNNQHSNDGTSGSRKGTNGWKSLEDDALGIGSGGQSSQGSTWNKS
TGSEGSGESSGTHSEKDGQRNGNRRRGNQQSLIQTALSRTDMDPRVLSNQGWGQTPVRQN
TAWDVSSSEKKAGNGSHGWGSASPQMSSSQSGWGDSPSTNTNNAGASGWGEQKPTSGWGE
TKAQNGWEDSSAGMNKGNSSWGNCKDDKSSSWSNGQKTKQSWGGSSGEGWGGEGSRGNHW
VEPQKSGSGGWDSDSDRSGSGWNEAGRCNTNNTWGGSGSTNTPDQGGQSAGWGDSVKTNN
QNQGWGEPIKQSHSNPAWGEATKSSNQSEWGKGQDANAGTFRAGNGSQTGAKNKSTGWLG
GPMPAALKEEEPTGWEEPSPESVRRRMEIDDGTSAWGDPSKYSYNSVNMWNKNTSAEQDI
SQQKPPPPAPSSMGQKEKSCNSGWGEPYAGPQKAESSSWAEPAVDIGTSAWGKPMDSGSS
WEEPGREKTGNGWSSQSQHKPGPKPVQSSWDGEMAMPAPSNWEEEEEVEIGMWNNNTPQE
VNQSGNWSYSKKVPPKMNKGPGKPDDPWMNQFVKQFNSMNFPRDSEDSMKSNKMDMPAAM
MDKRMDVDKHNTSMPSASRHPIHKDPPPIDRNSYMEKNVNMYGGGNATAQGRNSQQPPAQ
PLNSTQSNLRNQVPPPLLPSQVPPSLLKYTPNNTGLNTIFGPQQMAMLNQLSQLNQLSQL
NQINQLQRLLIQQKAQNQRVMTGNNRQAQEQQVRGFPAGAMVPPPRHVDPPLLKQHSPPQ
PAALHQPKPYMDNFISLNTPDLHKEQHTLNSFTNFPLGLASNLNVNNPDLGSVGFKEPQS
RLKKWTAMDVSINSPLDQNPSKPGAITSLRIEDPPFGPYDFISSTNSPISPPGSVGDGWP
TRAKSPHASSVNWPPEFRPGEPWKGYPNIDPETDPFVTPGSVINNLSINTVRDVDHLRDR
NIGPSSSLNTTLPSNSAWTSIRASNHSSSLSSTAQSTSARNSDSKWSPGSVSNSSLAHEL
WKVPLSSKGVSAPSRPPPGLTGQKQPSSWGNGSLRLGAWGSSEPRYTPGSSWGESSSGRT
NWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVCYSSKEEASKAQKSLHMCV
LGNTTILADFASEEEINRFFAQGQSMCVSAGWQALASSQSRLSSDAFSSGSGGGELHSSS
SLWGAPSYSSSLWGSSTCPEGSNRLSSPSPIASFLPVDHMTGSGDSM
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggactcggtcagccactcccctaaccaaacaggtttggatcacgct
ggtctggaccctcaatatgagaattcaccctggagctctggctcaccctgcagtgattca
aacagtaactggggcaaagtagacagctgtgataagggagcctggccttccatcactggt
agtgacccagagctggcctcagaatgtatggatgctgactctgtctccagctcagggtcc
gagaaaaacctctgcatgatggcttctgggatcgctggtggtgacagcaatggtaatagg
caaggcagcaatcaaggttctcatttcatggttgcaaatggcagcaataatgtggcaaat
gggagtgttaagggtccttggggctcagtgctaagcacatgtcaaggttctggagagagt
gccagtgacaagctggcagaagttggtcatggaaaaatgaatgcatggggtacccaagtt
ccctcaactaatgcaggtgtaaatccaagcactttgaacccaaatgccaaccatggtgcc
tggcccgttctgcagaatgctggtcccaactcccatgtgcctttgggcagtgggaacggg
ggaaccaacactcaacgaagcaccataggtcaaatgcccagcatgccgagtgttaactct
aagatgtcctggggaagcctgcaggaaaaggtggtcgaatctgaagccaatggtacaagc
aaggttctaagtgggcagcctcaaaaccttaacactgaatttaacggaccaaataacact
actaaccctatgacctctagtttaccaaactctacaggttcactgcagatgaatgaacga
tcctggcctgtgagcacagggggctcccctcagctccaaactactcctgtctctaatggc
acttccatttctcagcatggcaacagcgaggggatgaacagcgggtcctacggtacagca
tggggtgctccgcccagcactacttactctgaagacaaatgttctgtcccaaaaggccaa
gctgtgggcgacactgtgaacgcaactctaatgcagtccggagctaatggatcttctgtg
agcgctgcttctttcaaaaataataacaacgggatggtcagttgtggaggaggctgggac
tctcagtccactgcctctcaaaatttgacttggggagcaggtaacagcatgggtgctgct
ggagcctcttgtccctggggtagcacctcctcttcctcatcgtcctcctcaacgtcttca
aacactggcactaaagtctcgagtggggagtggggcgcattgcccagcaacaatcagcat
tccaatgatggcacaagcgggagcaggaagggaacaaatgggtggaagtccttggaagat
gacgctcttgggatagggagcggtggtcagtcgtcccaaggcagcacatggaacaaatcc
acaggcagcgaaggaagtggggaaagctcgggaactcatagtgagaaggatggacaacgt
aatggcaatcgcaggaggggcaaccagcagagtttgatacaaacagctctctctagaact
gatatggacccaagggtgctatccaaccaaggatggggacagaccccagtccggcaaaac
actgcctgggatgtatccagctctgagaagaaggctggaaatgggtcacatggatggggt
agtgcttccccccaaatgtcaagctcccaaagtggatggggagactcacccagcaccaac
actaacaatgctggtgcatctggttggggcgaacagaagcccacctctggttggggggag
accaaagctcagaatggctgggaagattcttcagccggaatgaacaaaggtaattcatct
tggggtaactgtaaggatgacaaatcctcttcctggagtaatggacaaaagacaaaacag
agttggggtggctcttctggagaaggatggggtggggaaggttcaagagggaaccactgg
gtggagccacagaaatctggatctggaggttgggatagcgacagtgaccgctctggttca
ggatggaatgaggccgggcgctgtaacacaaacaacacttggggtggaagtgggagcact
aacactcctgaccaaggtggtcagtcagctggatggggagattctgtaaagactaacaat
cagaaccaaggctggggtgagccaatcaaacaaagtcactccaacccagcctggggtgaa
gctacaaaatccagcaaccagtcagagtggggaaaaggccaggatgccaacgcagggacg
ttcagggcaggaaatggttctcaaactggagccaaaaacaagtcaactggatggctggga
ggtcccatgcctgctgctctgaaagaagaagagccgacaggttgggaagagccatctcct
gaatctgtccggcgccggatggagattgatgatggcacttctgcatggggagatccaagc
aagtacagctacaacagtgtgaacatgtggaacaagaatacctctgcagagcaggatatt
tctcagcaaaaaccacctccaccagccccaagctccatggggcaaaaagagaagagctgc
aactcaggttggggagagccgtatgcagggcctcaaaaggcggagtcctcgtcgtgggca
gagcctgcggtggacattggcacgtctgcgtggggaaagccgatggattctgggtcgagc
tgggaggaaccaggaagagagaaaacggggaatgggtggagctcccaatcacagcacaaa
cccggaccgaagcctgtgcagagcagctgggatggtgagatggcgatgcccgctccctct
aattgggaggaggaggaggaggtggagatcggcatgtggaataacaacacaccacaggaa
gtgaatcagtcaggaaactggtcctactcaaagaaggtccctcctaagatgaacaaaggc
cccgggaagcctgacgatccatggatgaaccagtttgtgaagcagttcaacagcatgaat
ttccctagggattctgaagactccatgaagagcaataaaatggacatgcctgcagcaatg
atggataagaggatggatgtggataaacacaacacgagcatgccatcagcctcacgccac
cctatccacaaagatccgccacccattgatcgcaattcgtacatggagaagaatgttaac
atgtacggaggtggaaacgcaacagcacaaggccgaaactcccagcagcctccagcacaa
cctctgaactcgactcagtccaatttacgcaaccaagtgcctcctccactgctcccctct
caggtccctccatcgctgttgaagtatacacccaataatacaggtctgaatacgatcttt
ggccctcagcagatggctatgctcaatcagctttcccagctcaaccagctctctcagctc
aatcaaataaatcagctgcagcgtcttctcattcagcagaaagctcagaatcagagggtc
atgactggcaacaaccgccaagcccaagaacaacaggtccgtggctttcctgcaggtgcc
atggtcccgccccctcgtcatgtggatcctcccctgctgaagcaacactcccccccacag
cctgccgcactgcaccagcccaaaccctacatggacaacttcatcagcctgaacacacct
gacctgcacaaagaacaacacacactcaactcttttaccaacttccctttaggcttggcc
tcaaacttgaatgtaaacaatcctgatcttggtagtgttgggttcaaagagccacagtcc
cgtctgaagaagtggaccgccatggacgtttccattaactcgccactcgatcaaaacccc
agcaaacctggtgctatcacctctctgaggattgaagaccctccctttggtccgtatgac
tttataagctccactaattctcccatcagcccccctggttcagtgggagatggctggccc
actcgtgccaaatcacctcatgcatcctctgtcaactggccaccagagtttcgtcccggt
gagccatggaaaggttacccgaacatcgaccccgagactgacccgttcgtcactcctggc
agtgtgattaacaacctctctattaacacagtgcgggatgttgatcacctcagggacagg
aacattgggccatcctcatcactaaacaccacgctgccttccaacagtgcctggacatcc
attcgtgcctccaaccacagcagttccctcagcagtacagcacaaagcacttcagccaga
aacagcgactctaaatggtctcctggttcagtgtctaactcttctttagcccatgagctg
tggaaggttcctctgtcgtctaaaggcgtctcagctccgtcccgtcccccgcccggcctc
accgggcagaaacagccctcctcctggggcaatggctctctgagacttggtgcctggggc
agttctgaacccagatacaccccagggtccagctggggtgaaagcagctcagggagaacc
aactggcttgttctcaaaaatctcacacctcagattgatggctccaccctgcgtactctg
tgcatgcagcacggtccactcatcacattccacctgaacctgccacatggaaatgctctc
gtctgctacagctcaaaggaggaggcgtcaaaggctcagaaatcactgcacatgtgcgtg
ttggggaacactactatcctggctgactttgcaagcgaggaggagataaatcgttttttt
gcacaaggccagtcgatgtgcgtgtctgcaggctggcaggcgctagcgtcctctcagagc
cggctctcgtcagacgccttttccagcggcagcggtgggggtgagctgcactcgtcctcc
tctctgtggggggcaccgagctactccagcagcctgtggggatccagcacctgccctgag
gggagcaatcggctcagcagtccatcccccattgcctccttcctgccagtggatcacatg
acaggaagtggcgactccatgtaa
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