Ictalurus furcatus (blue catfish): 128622275
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Entry
128622275 CDS
T09387
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128622275 (setx)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128622275 (setx)
5.6.2.5 RNA 5'-3' helicase
128622275 (setx)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128622275 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
UvrD-helicase
AAA_30
AAA_22
AAA_16
NPHP3_N
GLF
SLFN-g3_helicase
TIP49
nSTAND3
MIOS_a-sol
Motif
Other DBs
NCBI-GeneID:
128622275
NCBI-ProteinID:
XP_053504614
LinkDB
All DBs
Position
18:1723186..1750366
Genome browser
AA seq
2334 aa
AA seq
DB search
METCLWCTASAESDAAVVRVLNRYCTDAMTPKEMQDANSDFIYCLECVVEYHRARERVPA
LHKHLWKLETARLLKVFRDMLEADLEDSDLFFVDDEQEQPVSKFTPEEFLNGLRFPLMEV
LKYPYLLCDRDLCEMVVNVLCKMEDMQNPLPVHDQYQGIYLLMVHPNEKVRHWAIATARS
LGRVDRDNYYDLQEVFLCMFYIIDLGITVDFPNVDDSYCSGKLQMLPPHLYDSKNKKNYW
LGICMLLMQLDSQAMDSLLMGPEGQASIPQCIINTMNDCNKDDPGSDPFWPALHCFLVVL
DRLGSKIWGQIEPLDAFQAITKADSYIAEIKNIRQKTAGTRVKEETEDHDDLLSCSQIVY
DCYATERTSRSSNYSSGNSDTSGNAVFEEISCLVNVLQSEMGQGMRVYGSTFLWFIPFVR
SIMELNVLNSICIGEVIHYLDNNADKDVLSGRTHTCDKVTEFFIRILVDIIELHLSKGCM
ETLSYFTHIWVDLVMQCATLSGDIFHTRIHEGRGVHAASSHFGRGSRKPAVGGGAVSQAC
MKLIRSLLKEGGPTATETAPFLNLVNKQMRGVSARGWNLPKSEYENLKKCLIKLVKAISE
RPAVPNDVLPCAPPTPPSEPSENIISYPNPTLTPPLQQVQTRDVEVGPSRPIGTIDFIKN
EPPWDHGECQSFYDGQEEMITIKKEACKPIPSSEFGSPPEVNYIKNIDLGKGQEIESGKI
RDVAKKRFETEDEQGKCSGLKEFGHASGVSLQPSTSQSNISGSAGFSKSSKRTLEDDDDD
DDEPFDVRLRRLKRPVESRNENSTESRQVSVPLSRSAEKVDEASVIATSDVSSNDKKLLE
NRVARDPSFDSSTSPGRCYDYLSESQLFEYETEEYVASAWNEPDIDIPVVTKKQKLDSKA
CISPEAVEPMQSPEAVEPMQSPEAVEPMQTQLASDEDVERACLQVEAQICKQQQPHEPTT
SNIQVPSKPSSNEKYDFVQSKHFKSPPEKTGLTDKKGKQWLCRKPPVIEALSQKIKKHCR
THNTISPNPVKPCSSTTLTVASPSMVVPSRGCPASSVARSPSTPAIVPPKKVRKRAEPES
PAELLGLKKKERKAFDLSQRSLVSLGELRSHGQNVHVEPQQKSKRVRQKKVGVKKGKKML
ASQDMQYFIQSRRMLQKPTAATGAVAKSNKFSVPETLSKSKPAIETVAESGDEEDDYDFL
PCSQPDPDRRVDSKTGTCQVNTHLSDESKKAVNDWSENVTSKELSSHQNNKGACSSMPEG
AESRDGNCGGEDDDDDEWTSLTQNEPTDMELCSQMEQMEVEYGENLYTVSDFGNQPNISK
GETSVPLKPLSGNPPQKSLPDASTETSSNEQLFLKPSMPPECQKKTKPSTTKIYSSNSRS
ATLVKEMGKVANPPSAANVAKAKVARPPPAMPPPLLPKPPPKSTPQPEFRQPLPPRPSLN
PLKPDLKSSLSSVASASHVPSYKTYPRPEAPVPIQTPTVAQNRRLDNTPTYEPSYLKRAI
LKWEYNMFDNYRMFGTPKDLCPFALKEVPTNFSSYQEYFNILYPLLLINTFEEMVREWLN
GRKVRIELHVQAIEYHSCIASASFKVCLNAEQVKKQLYPREDDLVLLWLPENTGAYANDE
PGSTENIHFGCVVKSMLSNGGPFSTLYLTVQTRGNVSSVNTQPVRCEVIGSLISTLREFR
ALCLLQKSKLELPVLKPDMKYFAPCQDDLTNLDMPEYNRDQAQAISCGVAMVKRKQNTPK
ILLIHGPPGTGKSKIIVGMLHRLLSDGESPSLNRYAKSRRRRILLCTPSNAAIDNLMKKI
IILFKDMCLDKDAPQGNCGDINLVRLGSERTISEYLTPFSLDSQVKKRLEKAQQICDWDI
QRKKEELDKQIEKLSRQCAETGKKSATFEQLNARKLKCLQEREELSKQLKEFRSKRQSVQ
SRLLHDAHVICCTLSTSGSTLLEFAFRNLGHEPFNCVIVDEAGQAKETETLIPLLYRCPN
LILVGDPMQLPPTVVSQTAKQLGYDQSLMARLCKTRPYPSIFLSFQYRMHPVICEFPSKY
IYNNDLKSDRETARKLCSSSWPFEPYRVFDVIDGKERREGDSFSNLKEVNLVLLLLKLLG
EKHAMRKEKQQIRVGIITPYNAQKQRLLQALQNDTDKEYKKCIQVEVDTVDGFQGREMDC
IIVSCVRASNENGSIGFVANRQRMNVTITRAKFSLFILGHLCTLKQSEWGALIEDAKARG
TVIEAHESSFHQVTKKVLKPIPFSHSHSYPPNIPASSEDHRMHTRPSDPRLAEAHRSSRE
QDGANQSFTRPRPPSRRPSDPRFQQSSTRSFRAPPERRYDHHNASSGSCRAYRK
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atggagacgtgtctgtggtgtacagcatcggccgaaagcgatgcggcggtcgtgagggtt
ctaaaccgctactgcaccgacgccatgacaccgaaagaaatgcaggatgcgaacagtgac
ttcatatattgcctggagtgcgtggtggagtaccaccgagcaagagagagggtccctgcc
cttcacaagcatctatggaaattggagaccgctcgtctgctcaaagtcttccgggacatg
ttggaggccgatctggaggactcggacttgttctttgtcgacgacgaacaggagcagccc
gtctcaaagtttacaccggaggaatttctcaacgggctgagattcccactcatggaagtg
ctgaaatacccttacctgctgtgcgaccgggatctctgcgaaatggtggtgaatgtgtta
tgcaaaatggaggatatgcaaaaccccctaccagtgcatgaccagtatcagggaatttac
ctgctcatggtgcacccgaacgaaaaggtgcgtcactgggctatagccactgccaggtcg
ttgggcagggtggaccgagataactattatgatctccaggaggtcttcttgtgcatgttc
tatataattgacttgggaatcactgtggactttccaaatgtggatgactcttactgctct
ggcaagcttcagatgctacctccacatctctatgactccaaaaataagaagaattattgg
ctaggtatctgtatgttgctgatgcagctggattcacaggccatggactctttgttaatg
gggcccgaagggcaggccagcattccccagtgcattattaataccatgaatgactgcaat
aaagatgacccgggatcggatcccttctggcctgctttgcactgtttcttggtcgttcta
gaccgactgggctcaaagatctggggtcagatagaaccgctagacgctttccaggccatc
actaaagcagacagctacatagctgaaattaaaaacatccgacagaaaactgcagggaca
agagtgaaagaggagactgaggatcacgatgatctgttatcctgcagtcaaatcgtgtat
gactgttacgctacggagcgaacgagtcgatcatcaaactactcatctggcaacagtgac
accagtggcaatgcagtctttgaagaaataagctgcctagttaacgtcttgcagtctgaa
atgggccaaggcatgcgtgtatatgggagcacctttctctggttcattccgtttgttcgc
tcgatcatggagttgaacgtgcttaatagcatctgcattggggaagttatccactatctg
gataacaacgccgacaaggacgtgctgtctggacggacacacacctgcgacaaagtcacg
gagttctttatccgcatcctcgttgatataattgagctgcacctaagtaaaggctgcatg
gagacactgtcctactttacccatatctgggtggatttggtaatgcagtgtgctaccctt
tctggcgacatttttcataccagaatacacgaaggtaggggggtccatgcggcatcttca
catttcggtagagggtcccggaagccggcagtcggtggtggtgccgttagtcaagcttgc
atgaagctgattcgctctctgttgaaagaagggggaccgacggctacagagaccgcgccc
tttctgaacctggttaacaaacagatgcgcggtgtctcggccagagggtggaatcttccc
aaatcggaatatgagaatcttaagaaatgcttaatcaagcttgtaaaagcaatatcggaa
aggcctgcggttccaaacgatgttctgccatgtgctcccccaacgccaccttcagaacct
tcagaaaatatcatttcctacccaaatcccacattgaccccgcctctgcagcaagtacaa
accagggatgtagaggttggtccaagtcgtcctataggtacgattgattttattaagaat
gaaccaccgtgggatcatggggaatgtcaaagtttctatgatggccaagaagaaatgatt
acgataaagaaagaagcttgcaagccaataccaagttcagaatttggatctcctcctgag
gttaattatataaaaaacatagacttggggaaaggacaggaaattgaatctggaaagata
cgagacgttgctaagaaaagatttgaaactgaggatgaacaaggtaaatgcagtggcttg
aaagagtttggacatgcatcgggtgtaagccttcaaccttccacctcacagtctaacatc
tcaggctctgccggatttagcaagtcctctaaaaggacgttggaggatgacgacgacgac
gacgatgagccctttgatgtccgactgcgtcgtctgaagagacctgtcgagtcccgtaac
gagaattcaaccgagtccagacaggtttcagtaccgttgtctcgcagtgcagaaaaggtc
gatgaggccagcgtaatcgccacttcagatgtttcttcaaatgacaaaaagctgttagaa
aacagggtagcacgtgatccctcttttgactcgagtacgagcccgggtcgttgttatgat
tatttgagcgaatcacaattatttgagtatgaaaccgaagagtacgtggcatctgcctgg
aatgagccagacattgacatcccagttgtgaccaaaaagcaaaaacttgattccaaagcc
tgcattagtccggaggctgtggaacccatgcagagtccggaggctgtggaacccatgcag
agtccggaggctgtggaacccatgcagactcagctggcctcggacgaggacgtcgagaga
gcctgtctgcaagtagaggcgcaaatctgtaaacagcaacagccacatgaaccaaccaca
tcaaacatccaagtgccatccaaaccgagttccaatgaaaaatatgatttcgttcaatcc
aaacatttcaaaagtccccctgaaaaaactggcctcactgataagaaaggcaagcaatgg
ctgtgcagaaagcctcctgttattgaagccctgagccaaaaaatcaagaaacattgcagg
acacacaacaccatatctccaaaccctgtgaaaccatgttcttccacaacgctgactgtt
gcatcaccctctatggttgtcccttccagaggctgtcctgcctcctctgttgcacgttca
ccatccacccctgccatagttccaccgaaaaaggttcgcaaacgtgctgaaccagaatct
cctgcagagcttctggggttgaaaaagaaggaaaggaaagcttttgatctttcgcagcgt
tccttggtctcgttgggtgagcttcgatcacatggccagaacgtgcatgtcgagccacaa
cagaagtcaaaaagggttcgtcaaaagaaggttggtgtgaagaaaggcaagaagatgctt
gcatcacaagatatgcaatactttatacagagccgtaggatgctccagaagccaacggcg
gccactggggctgttgccaaatcaaacaaattttctgtacctgagaccctatcaaaatca
aaacctgcaattgaaactgtggcggaatcgggagatgaggaggatgattacgatttcctt
ccatgctctcagcctgatcctgaccgaagggtggacagtaaaacgggtacttgtcaagtc
aacactcatttgtcagatgaatccaaaaaagcagtaaatgattggtctgagaacgttaca
agtaaagagctcagttcccatcaaaacaataaaggtgcctgtagttccatgccagaaggt
gcagaatccagggatggaaactgtggtggtgaagatgatgatgatgatgaatggacaagc
cttacacaaaatgagcctacggacatggagttatgctctcagatggagcagatggaggta
gagtatggtgagaacttgtacacggtcagtgactttggcaaccaaccgaatatttctaaa
ggagaaacgagtgtgccacttaaaccattatctggcaacccgcctcagaaatcccttcct
gatgcttccactgagacgtcttcaaatgaacaattgttcttaaaacctagcatgcccccg
gagtgtcagaaaaagaccaagccttcgacgacaaaaatttactcctcaaattcccgcagt
gccactttggtcaaagagatggggaaagtagccaaccctccatctgctgctaatgttgct
aaggctaaggttgcacgaccaccaccagcaatgccgccgccgctgctaccaaaaccacct
ccaaaatccacaccacagcctgaattccgccagcctctacccccgagaccctccctgaac
cctctaaaacctgatttaaagtcgtctctttctagtgtagcgtctgcttcccatgtaccg
tcctataagacctatcccagaccagaagcgcctgtaccgatacaaacgccaacggtggct
caaaatcgaagactcgataatactccgacgtatgagccatcctacctgaaacgggcgatt
ttaaagtgggagtacaacatgttcgacaactacagaatgtttgggacacccaaagacttg
tgtccatttgcccttaaggaagtaccaaccaatttctctagctaccaggagtacttcaac
atcttgtacccacttctgctcattaatacatttgaggagatggtccgtgaatggcttaat
ggtaggaaagtccgtattgaactccacgtccaggcaattgaataccacagttgcattgcc
agcgccagtttcaaagtatgccttaatgctgagcaggtgaagaagcagttgtatcctaga
gaagatgaccttgtgctcctctggctgccggagaacactggtgcatatgctaacgatgag
ccaggttctactgagaatatccactttggctgtgtggtgaaatccatgttgagtaatgga
ggtccgttctccacgttgtaccttaccgttcagacgcgtggtaacgtgtcctccgttaac
acccaacccgtacgctgtgaggtgatcggctccctgatcagtacgctgcgggaattcaga
gcgctgtgtttgctacaaaagagcaagctggagcttccggttctcaagccagatatgaaa
tactttgcaccctgccaggatgacctgacgaacctagatatgcctgaatataatcgggac
caggcccaggcaatcagctgtggtgttgcgatggtgaaaaggaagcagaataccccaaag
attttgttaatacacggaccaccagggaccggcaagagcaaaatcatagttggcatgttg
caccgtcttctctctgatggagagagtccttcactgaatcgctatgctaagtctcgcaga
agaagaattctgctctgcaccccgtctaatgctgccatcgacaacttgatgaagaaaatc
attattctcttcaaagatatgtgcttggacaaagatgctccacaagggaactgtggtgac
atcaacctggtgcgactagggagtgagaggaccatctcggagtacctgacacccttcagc
ctcgacagccaggtcaagaaaagattggaaaaagcacaacaaatctgtgattgggatatc
cagaggaagaaggaggaactggacaagcaaattgaaaagctgtctcggcagtgtgccgag
acgggcaaaaaatcggccacgtttgaacagctgaatgccaggaagctaaagtgcttacaa
gaacgggaggaactcagcaaacagttgaaggagtttcgtagtaaaagacaatcggtgcag
tcgcgtctcttgcatgacgctcatgtgatctgctgcacgctgagcactagtggcagtacc
ctcctcgagtttgccttccgcaaccttggacacgaaccgttcaactgcgttatcgttgac
gaggcaggacaagctaaagaaaccgaaaccttgatccctttgctttatcgatgcccgaac
ctcatcctggtgggcgaccctatgcagctcccgcccactgtcgtatcccagaccgccaaa
cagctgggctacgaccagtcgctgatggctcggctttgtaagacgcgtccgtaccccagc
atcttcctcagtttccagtaccgcatgcacccagttatatgcgagttcccatccaagtac
atctacaacaatgacttgaaaagtgaccgtgagactgctcggaagctgtgctcatcctcc
tggccgtttgaaccctacagagtgtttgatgtgatcgatggaaaagagagaagagaggga
gattcctttagtaacctgaaggaggtcaacctggtgctgctgcttttgaagctgcttgga
gaaaagcatgccatgcgcaaggaaaagcagcagattcgcgttggcatcatcactccatac
aacgcccagaaacagcgtctcctgcaggcccttcagaacgacacggacaaggaatataaa
aaatgcatacaggtggaggtggacactgtggatgggttccagggccgtgaaatggactgc
atcattgtgtcctgtgtaagagccagcaacgagaacggttctatcgggtttgttgctaat
cgccagaggatgaatgtgaccataactagagctaaattcagcttgtttatcctgggacat
ctctgcactctcaagcagagcgaatggggcgcgctgatagaggacgcaaaggcacgtggc
accgtaatagaagcccacgagtccagcttccaccaggtcacgaagaaggtgctgaaaccg
attccattctcacatagtcactcgtacccccccaacattcctgcctcttctgaagaccac
agaatgcacacgagaccttcagacccgcgtctagcagaggctcatcgttccagcagagag
caggacggtgcgaaccaaagcttcactcgcccaaggccacccagtcgccgtccttcagat
cctcggttccagcagagctccacgcgttcctttcgtgcacctccagaacgacgttacgac
catcacaacgcttcatcagggtcgtgtagggcatacaggaagtaa
DBGET
integrated database retrieval system
