Ictalurus furcatus (blue catfish): 128622367
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Entry
128622367 CDS
T09387
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128622367 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128622367 (tnrc6c1)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128622367 (tnrc6c1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128622367 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
128622367
NCBI-ProteinID:
XP_053504794
LinkDB
All DBs
Position
2:complement(12992907..13060515)
Genome browser
AA seq
1804 aa
AA seq
DB search
MEEKKKKKQEEKKKKEAAQKKAAEQETKVPDSAKHSPAPLLPANPSATNPSVSSASSSGA
NGKRAPSSTQQQQQSAVQRYPPREVPPRFRQHEHKQLLKRGQPLPAGSPAVVLLSSTSPT
VQSFPSQSHPDLPLQSGRSAQYESPHWGHTPINCSATIVTTGNSGWDQLIIDKSDKEEWP
SISHSESHIPAGCTSDTEIVNINSNKDSMSMATGGSQQGHFSTNHPSKASNSHSGGILSS
QSGVSRGWGSGPSPAVAGEGKSDGSGASLGARTWGSSNFNLNLNPNANPSAWPVLGHEGT
GVGGSSGVSSQAPSNICSQPGAPSSGPSSSGNLVSGNGNSAGNSGNVNSSTAWGGMVSSD
TSEPHSSPSTNVSFSSEPQNLNTEGPNHTKKEPMSPANSLPNWGVTPVGMGSFVQSPAGS
SQVNGEEGSVWGNGDAKTSNSSKDSGWNSGSGWGQGVASGTPGWGQASSNGDWGKHSSES
KGWESAGSPSQEQPLSSWGSGANAPASEGSSDSMDGHSHRREHSRDMAPPLLPAQDMDPR
VLCNTGWGQTPVRQHTAWETEEAARSNQKNDVGTEAWGSSSNAPHMAQPPSHGSVNPSSG
PDSGGKSDVHRPVAAATSGWGTSPSPSCSGWGDNTKKPPIGPGGWGNPPQGGHSGSLQKS
GQSWGSEDKSPTWDDSHAKGKPQGWGEGPKPSHGWGTDPGGDSGAGDEWGDSGEGKKNGP
SSSSWEGDGTGWKESPRGWGKPSPGGGWGDAQRSNASTQGWSNKSQEGGNGSNAGGSMGS
WGGSGSLKQSGSGWGGSNGGGVKHNAAEPTGWEEPSPPSIRRKMEIDDGTSAWGDPSSYN
KTVNLWDRNNPGMQSKTGPGTANNPPSNHHHHTHHNQPPLQGHGGGPVVTNSHITPDNTS
PHQAVAPHSRAPLMTTGWGEMPNVHAKPEPSWGEPVPPPASVDNGTSAWGKPPGGWGDSS
PEGYGRAGGPPGSAPCKPASKSMQDGWGGGEDMGLSTGQWEQDESDMWNSTASQESSSSC
SSWGNQPKKGSQKPKVPNKQDDAWIMTRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSA
LLEKKTELDKRGLGISDYSNGLVNKPMSCRPSIISKDSSSDRPAFLDKDGGLADDAQTSP
FMPSPSLKLPLASAALPGQSLGVTMQNLNNRQMQSGMFGSSGTAQTRALQQPPPQPAVPP
LNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQLYHLQLA
YQRLQIQQQMLQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQVLLVKQQQQQQQ
PPPSHPSLHPSAGKSALDAFPSHQQASGLSVSDLPTKEPQSSPNSFSSYTLSGLNPNMNV
NCMEVGGLSMKDSPQPQSRLSQWTHPNSMENLSGSSSPMEPGLSKHGAISAGPNLGAPGK
PSLDDSYNPYNLMQGTDSPASPLVTPDSWGQSKNANDKMSNGTNISWPPEFCPGVPWKGL
QNIDPETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSGGKLSDMKSTWSPGPISHTQAS
LSHELWKVPQGPRNTTAPTRPPPGLTNTKPSSTWGGSSLGLVPGWSGSYSSGTTWSTDSS
NRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKDEAGKAQKSL
HMCVLGNTTILAEFAGEEEVNRFFAQGQSLTPTTSWQANPGTNQTRLGGGASATSHPIGH
WNTGSLGGGGASSAAKAGNELLWGGVQQYSSLWGPPSTEEGRVVGSPTPINTLLPGDLLS
GESM
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaagaagaaaagaagaaaaaggaagctgctcagaaa
aaggctgctgaacaggaaaccaaagtgccagactctgccaaacacagccctgcccctctt
ctccctgccaaccccagcgctaccaacccctctgtgtcctcggccagcagcagtggtgcc
aatggcaagcgtgcgccctccagcacccagcagcagcagcagtcggcagtacagcgctac
ccgcctcgagaggtgccaccacgtttccgccagcacgagcacaagcagctattgaagaga
ggacaacctctgcctgctgggagtcctgctgttgtgctgctgtcctcaaccagccctact
gtgcagtccttccccagccagtcacacccagacctgcccttgcagagtggccgttcagca
cagtatgagagtccccactggggacatacacccatcaactgcagtgctactatagtcaca
accggtaacagtggctgggatcaactgattatagacaaaagtgataaagaggagtggcct
tctatttctcacagcgaaagccacatccctgcaggatgcacatcagacactgagattgtc
aacatcaacagcaacaaagacagcatgagcatggccacagggggcagccagcaaggacac
ttttccactaatcatcccagtaaagccagtaacagccactcaggaggaatcctctccagc
cagagtggggtcagtagaggctggggctctggcccatctcctgctgttgctggagaagga
aaaagtgatggcagcggtgcatcattgggagccaggacctggggctcctccaactttaac
ttgaatttgaatcccaacgccaacccctctgcctggccagtcttgggacatgaggggaca
ggcgtgggtggcagctctggagtatccagccaagctccttctaatatctgcagccaaccg
ggtgctccatcctctggacccagcagtagtggcaatttagtcagtggcaatggaaattct
gctggaaattctggtaatgttaatagcagcaccgcctggggtggtatggtgtctagtgac
acctctgagccacactcctcaccttccacgaatgtgtcttttagctctgaacctcagaac
cttaacactgaaggaccaaatcacactaagaaagagcccatgagccctgccaatagtctg
cctaactggggtgtcacccctgttggcatgggctcttttgtccaatctccagcaggaagt
tcacaggtcaatggggaggaggggtccgtgtggggtaatggagatgccaagacttccaat
agctctaaggactcaggctggaattccggaagtggttggggtcaaggagtggcttcaggc
acccctggctggggacaagcctcatccaatggggactggggcaagcattccagtgaatct
aaagggtgggagtctgcaggatctcccagtcaagagcagccactcagttcttggggtagt
ggggccaatgctccagctagtgagggaagcagtgatagcatggatggtcattctcacagg
agggaacactcaagagatatggccccacctctgctgcctgcccaggacatggacccaagg
gttctgtgcaacacaggatggggacagacccctgtacgtcagcacacagcctgggagacg
gaagaagctgctcgctcaaatcagaagaatgatgttggtactgaagcctggggctcatct
tcaaatgcacctcatatggcacaaccaccatctcatggtagtgtcaatccaagttctgga
cctgactctgggggcaagagtgatgtgcatcgccctgttgcagcagctacatcaggctgg
ggaacatctcccagtccatcatgctctggatggggtgacaacaccaagaaaccccctatt
ggtcctggtggttggggcaaccctccacaaggtggccacagtggtagcttgcaaaaaagt
gggcagtcctggggctctgaagacaagtctcctacatgggatgactcccatgccaagggt
aaacctcagggttggggtgaaggccccaagccatcccatggttggggcaccgacccagga
ggggacagtggtgctggtgatgagtggggtgactctggagaaggaaagaagaatggacca
tccagctcttcctgggagggagatggaacaggatggaaagaaagccctcgtggttgggga
aaaccatccccaggtggaggctggggagatgcacaacgctccaatgcctcaacacaggga
tggagcaacaagtctcaggagggtggcaatggcagtaatgctggtggaagcatgggttca
tggggaggttcaggctctctcaaacagagtggttctggttggggaggaagcaatggggga
ggagtaaaacataatgctgcagagcccacaggatgggaagagccctccccaccctccatc
cgacgcaagatggaaattgatgatggtacctcagcttggggtgatccaagcagttataat
aagacagttaacctgtgggacaggaacaatcctggaatgcaaagtaaaacaggccctgga
actgccaacaatccccccagcaaccatcaccaccacacccaccataatcaaccaccattg
cagggacatggaggagggcctgttgtaaccaacagccatatcactcctgacaatacaagc
ccacatcaagctgtggctcctcatagcagagcacccctgatgaccacaggatggggagaa
atgcctaatgtccatgccaaacctgagccctcatggggagagccagtgccccctccagca
agcgtggacaatggtacatcagcctggggcaaaccccctgggggctggggtgacagtagc
cctgaaggctatggccgagctggaggcccaccaggatctgccccctgcaagccagcctct
aaatctatgcaagatggctggggaggtggagaggacatgggcctgtcgacagggcagtgg
gagcaggatgagagtgacatgtggaacagcacagcctctcaggagagcagttcatcctgc
agctcatggggcaaccagcccaagaaaggttctcagaagccgaaggttcctaacaaacaa
gacgatgcctggattatgacccgtctgattaagcagctgacagatatgggtttccctaga
gaccctgcagaggaggctttgaagagcaacaatatgaacctggaccaggctatgagtgcc
ctgttagagaagaagactgaattagataagcgagggctgggaatctctgactacagtaat
ggcctcgtcaacaagccaatgagctgcaggccttcaatcatctccaaagactcctcctca
gaccgtcctgccttcctggacaaggacggaggactagcggacgatgcccaaacttcacca
tttatgccttctcccagcctgaagctcccgttggctagtgctgccctccctggccagagt
cttggggtcacaatgcaaaacttgaacaacagacagatgcagagtggcatgtttggcagt
agtggaacagcacaaacccgggccctgcagcagcctcctcctcagccagcagtgccacct
ctcaactcctcccagcctagtctacgtgctcaagtgcctcagtttctctcccctcaggtt
caagcacagctcttacagtttgcagcaaaaaacattggtctcaaccctgcacttttaacc
tcaccaataaaccctcagcatatgaccctgttgaaccaactctaccatctgcaactggca
taccagcgtttacaaattcaacagcagatgttgcaggcacagcgtaacgtttctggccct
atcagacaacaggagcagcaagttgcacgtacaatcaataacatgcagcagcagatccag
cagcaccagcggcagctggcccaggttctgctggtgaagcagcagcagcagcagcagcag
cctcctccctctcatcccagcctgcatcccagcgcaggcaaatcagcactggacgcattt
ccttcacaccaacaggcatcaggcctctctgtctctgacctgccgaccaaagagccgcag
tcttctcccaactccttctcctcttatactctctctggattgaaccccaacatgaatgta
aactgcatggaggtgggaggtctgtccatgaaggactctcctcagcctcagtcgcgcctg
tcacagtggacgcaccccaactccatggagaatctctctggcagctcctcgcctatggaa
cctggcctcagcaagcatggtgccatttctgcaggtccaaaccttggtgctccaggtaaa
cccagtctggatgactcctacaacccatataacctgatgcagggcactgactctcctgcc
agtccactggtgaccccggacagctggggccagagcaagaatgccaatgacaagatgtcc
aatgggaccaacatcagctggccaccagagttctgcccaggagtgccctggaaaggacta
cagaatattgaccctgagacggaccccaatgtgaccccaggaagtgtccccagtggcccc
accatcaacaccaacattcaggatgtgaaccgctacctgctcagagacaggagtggaggc
aagctctcagacatgaagtccacttggtcgccagggcccatctcgcacacacaggcctca
ctgtcccatgagctatggaaggtgcctcagggaccgaggaacactacagcccccacacgt
cctccacctggcttgaccaataccaagccctcctccacctgggggggcagcagcctaggc
ttggtgcccggctggagcggttcttactcctcaggtaccacatggagtacagacagctcc
aacaggaccagcagctggctggtactaaggaatcttacaccccagattgacggctctact
ctgcggacgctgtgcatgcagcatggccccttaatcacattccacctcaacctgacgcag
ggcaacgctgtggtgcgctacagctccaaggacgaggctggcaaagcccagaagtccctg
cacatgtgtgtgctgggcaacaccaccatcctggcagaattcgctggagaggaggaggtg
aaccgcttctttgcacagggtcaatcactcacacccaccaccagctggcaggccaaccca
ggcaccaatcagacgcggcttgggggtggagcatctgccacgtcgcaccccattggccac
tggaacactggcagcctgggaggaggcggggctagcagtgcagctaaggcaggcaacgag
ctgctatgggggggtgtgcagcagtactccagcctttgggggccgcccagtacagaggag
ggccgagtggtaggcagcccaacccctattaacacgctgcttcccggagacctgctgagt
ggagagtccatgtga
DBGET
integrated database retrieval system
