KEGG   Ictalurus furcatus (blue catfish): 128622534
Entry
128622534         CDS       T09387                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ifu  Ictalurus furcatus (blue catfish)
Pathway
ifu03082  ATP-dependent chromatin remodeling
ifu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    128622534
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    128622534
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ifu01009]
    128622534
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ifu03021]
    128622534
   03036 Chromosome and associated proteins [BR:ifu03036]
    128622534
Protein phosphatases and associated proteins [BR:ifu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     128622534
Transcription machinery [BR:ifu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     128622534
    SWI/SNF complex
     128622534
Chromosome and associated proteins [BR:ifu03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    128622534
   PBAF complex
    128622534
   SWI/SNF complex
    128622534
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 128622534
NCBI-ProteinID: XP_053505099
LinkDB
Position
18:6124522..6134801
AA seq 373 aa
MALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
AASSHDHGYTTLATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQTEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS
ILDEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggcgttgagtaaaacattcggtcaaaagccaataaaatttcaactcgaagaagatggc
gatttttacatgataggctctgaggttggaaattatttgcgtatgttcagaggttcgctg
tacaaaaggtacccatcgttgtggcgcagactcgcttcagtagaggagaggaaaaagatc
gccgcgtcgtcacacgatcatggttacacaactttagccaccagtgtgactctgctgaag
gcgtctgagtgtgaagagatcttcgagggcaatgatgagaagtacaaggcagtgtccatc
agcacagaacctccagcctacctcagggaacagaaggccaagaggaacagtcagtgggtc
cccacgctccccaacagttcccaccacctggacgctgtgccttgttccaccaccatcaac
cgaaaccgcatgggacgcgacaagaaaaggaccttccccctgtgtttcgatgaccacgac
ccagcggtgatccatgaaaacgcctcacagacagaggttctggttcccatccgattggac
atggagatagacggccagaagctccgagacgccttcacctggaatatgaacgagaagctg
atgacgccagagatgtttgcagagatattgtgtgacgatttggacctgaacccactgacg
ttcgtcccagccatcgcctccgccatccggcagcagatagagtcctaccctactgacagc
atcctagacgaacagaccgatcagagagtcatcatcaagctgaacatacacgtgggaaac
atttccctggtggaccagtttgagtgggacatgtccgagaaggagaactctccagaaacg
tttgcgctgaagctgtgctctgagctcggtctcggaggagagttcgtcaccaccatcgcc
tacagcatccgcggccagctcagctggcatcagaggacgtacgccttcagtgagaacccc
ttgccgacggtagagattgccattcggaacacgggcgatgccgatcagtggtgccccctg
ctggaaacgctgacagatgcagagatggaaaagaagatcagagatcaggacagaaacaca
aggcgcatgcggcgacttgccaacaccgcccccgcctggtag

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