Ictalurus furcatus (blue catfish): 128622714
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Entry
128622714 CDS
T09387
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03015
mRNA surveillance pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128622714
09123 Folding, sorting and degradation
03018 RNA degradation
128622714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128622714
03041 Spliceosome [BR:
ifu03041
]
128622714
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128622714
mRNA cycle factors
Stress granule specific factors
128622714
Spliceosome [BR:
ifu03041
]
Complex C
Other components
Complex C specific factors
128622714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RBD_DEAH11
RRM_occluded
RRM_2
Motif
Other DBs
NCBI-GeneID:
128622714
NCBI-ProteinID:
XP_053505390
LinkDB
All DBs
Position
18:complement(13206325..13213843)
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AA seq
904 aa
AA seq
DB search
MNTNFVMATLYVGDLHSNVTEPMLVETFSPAGPIHSIQLCRDKKTGSSLGYAYVNFQHPA
DAERALEMLNFELLMGQPMRIMQFQRDSSLRKTSIGNLFIKNLDKSIDNMALFDTFSLFG
KILSCKVVADEKGSKRYGYVHFESAEAADFAMERLNGKFLNGRKVFIEHFKSREERKAET
GPRQQVVTNIYVKNFGDDMDNKMLKDIFSKFGPVASVQVMTDENGKSRRFGFVRFERHED
AQRAVDEMNGKELKGKKVYVGPAQNKVERQTELKHKYEQGMNLYVKNLDDSVDDECLHTA
FSAFGNIVNAKVMMENGCSKGFGFVRFWSPEEAMNAIKGLNGRMWGRRQIYVGVAQRKKE
RQAYLAHQNIQRLARMQTQYLAPYYASWQQVEMTFPHYTAQTIQPQYVHHMSDVVYYMSD
VMHLATAHQQTYGTITPTTNQLPYMDQVCTDTTTATAADSTPVADTVSAVDTVIAVDTVP
AVDTVIAVDTVPDLLPPAAPSPPPAAVEIPAQNPAAVEIPAPDPAAVEVLAPDPAAVEVP
APEPAAVEVPAPEPAAAEIPAPDPAAVEVPAPHRAAVEVPAPDPAAVEVPAPEPAAVEIP
APEPSAVEVPAPDPSAVEVPAPDPAAVEVPAPDPAAVEVPASEPAAVEIPAPEPAAVEIP
APEPSAVEVPAPDPSAVEVPAPDPAAVEVPASEPAAAEIPAPEPAAVEVPAPETAAVEVP
APDPAAVEVPASEPAAVEIPAPEPTAVEVPAPDLAAVEIPVPEPAVVEVPAPEPTAVEVP
ASEPAAVEVPAPEPAAVEVPAPEPAAVQVPAPEPAAFEVPAPEPTAVEVPAPEPAAVEVP
APDPAAVEVPAPAADEDITTSTSTVSDVPTYPPAGKVLTIYVLESAPVDDQIQMFKDVLQ
QRQQ
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgaattttgtaatggccacactgtatgtgggggatctgcactccaatgtgaca
gagcccatgcttgtggagacgttcagtcctgcaggacctattcactccatccagctctgc
agagacaagaagacaggctcctcactcggctatgcatacgtaaactttcagcatccggcc
gacgctgagcgagcactggaaatgctcaattttgagctccttatgggacagcccatgcgc
atcatgcagtttcaaagggattcatccctgaggaaaaccagtatcggaaacttgttcata
aagaacctagacaagtcaattgacaacatggccctttttgacaccttctccttatttgga
aagattctgtcgtgcaaggttgtagctgatgagaaggggtcgaaacggtatggctatgtc
cacttcgagtctgctgaggcagcggattttgccatggaaaggctcaatggcaaattcctg
aacggccgtaaagtgtttatcgaacactttaagtcacgtgaggagcgcaaggctgagacg
ggccctcgtcaacaagtcgtcaccaacatctacgtcaaaaactttggtgacgacatggac
aacaagatgctaaaagacatcttcagcaagttcggtcctgtggcaagtgttcaagttatg
acagatgagaacgggaagtccagaagatttggcttcgttagatttgagaggcacgaagat
gcacagagggctgtggatgagatgaacgggaaagagctgaagggcaagaaggtgtatgtg
ggcccagcacagaataaagtagagagacagactgaactcaagcacaagtatgagcagggt
atgaacctctacgtgaagaacctggatgatagtgtggatgacgagtgtctacacactgct
ttctctgcatttggaaacattgtgaacgcaaaggtgatgatggagaatggctgctccaaa
ggctttggcttcgtgcgcttctggtctcctgaggaagccatgaatgccataaaggggctg
aacggcaggatgtggggcaggaggcagatatatgtgggcgtggctcagcgcaaaaaggag
cgccaggcttaccttgcccatcagaacatccagaggttggcaagaatgcagacccagtac
ctggctccctattatgccagctggcagcaggtcgagatgacttttcctcattatactgca
cagaccatccagcctcaatatgtccaccatatgtctgatgtagtctactatatgtctgat
gtgatgcatcttgcaacagcacatcagcagacctatggcaccatcacacccacaaccaat
cagttgccatatatggatcaagtgtgtacagacacaactacagctacagctgcagattct
actcctgtggcagatacagtttcagctgtggatactgttatagctgtggatacagtgcca
gctgtagacacagttatagctgtagatactgtgccagatctacttccacctgcagctcca
agtccacctccagctgcagttgagattccagctcaaaacccagctgcagttgagattcca
gctccagacccagctgcagttgaggttctagctccagacccagctgcagttgaggttcca
gctccagagccagctgcagttgaggttccagctccagagccagctgcagctgagattcca
gctccagacccagcagcagttgaggttccagctccacaccgagctgcagttgaggttcca
gctccagacccagctgcagttgaggttccagctccagagcccgctgcagttgagattcca
gctccagagccatctgcagttgaggttccagctccagacccatctgcagttgaggttcca
gctccagacccagctgcagttgaggttccagctccagacccagctgcagttgaggttcca
gcttcagagccagctgcagttgagattccagctccagagcccgctgcagttgagattcca
gctccagagccatctgcagttgaggttccagctccagacccatctgcagttgaggttcca
gctccagacccagctgcagttgaggttccagcttcagagccagctgcagctgagattcca
gctccagagcccgctgcagttgaggttccagctccagagacagctgcagttgaggttcca
gctccagacccagctgcagttgaggttccagcttcagagccagctgcagttgagattcca
gctccagagcccactgcagttgaggttccagctccagacctagctgcagttgagattcca
gttccagagccagctgtagttgaggttccagctccagagcccactgcagttgaggttcca
gcttcagagccagctgcagttgaggttccagctccagagccagctgcagttgaggttcca
gctccagagcctgctgcagttcaggttccagctccagagcccgctgcatttgaggttcca
gctccagagcccactgcagttgaggttccagctccagagccagctgcagttgaggttcca
gctccagacccagctgcagttgaggttccagctccagctgcagatgaagatataactaca
tctacatctacagtatctgatgtacccacatatccaccagctgggaaggtgctgacaatt
tacgtgttggagtctgccccggtagacgaccagatccagatgtttaaagatgttttacaa
caacgtcaacaataa
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