Ictalurus furcatus (blue catfish): 128622855
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Entry
128622855 CDS
T09387
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128622855 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128622855 (pcf11)
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128622855 (pcf11)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128622855 (pcf11)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128622855 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
128622855
NCBI-ProteinID:
XP_053505606
LinkDB
All DBs
Position
18:complement(17696094..17709516)
Genome browser
AA seq
1489 aa
AA seq
DB search
MSAEAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLQFAEDIVAIIEAQIAKAPPA
EKLPVLYLVDSIVKNVGGQYLEVFTKNLITSFICVFEKVDENTRKCLFKLRSTWDEIFAL
KKLYALDVRVNSLDPAWPIKPLPPNVNASIHVNPKFLKSTEELAPHPTVTEKNLAEEQII
RQQLLAKQKQLLELQQKKIELELEQTKAQLAASTNHPPHNGPVKSEPPAVSQPGPAQHKS
RPPPQADKPSNRDPRLNRASAPSVIIKEHGPFRKENQGTPPVVNAPEKRVPVPPERPSKL
MRIPKKDTSAADEKAKSKSVSPLSKGVFHKSKDSEPEHQKTLDVNKKDPRLRKQMHEKTD
LKEDEVKEKKKSKEREDIGKGTEPQRSSNSRGKLVNGGLNKHDRFDTFQKQDIKVNKTNI
RKRSRSRSRSPPSHFPKRKDRRSPKRRTRSITPPPKSGKARQLSKHIEEDNQQVNVREDR
SAPKKNVSELRRIKRPLEDRTPEHRDVQPQRALSVEHKSAKDIKRWRSGWEENKPLKQLD
PDISHGKPGPQRHKAWNSYQRPPPIPRTLKQHRLSVDANLQIPEVLNSASKRDLLRKASQ
RLDSGELTQEEFLNVAHQIKQIFQYQEERQRSDSWEGTNDDGACTRKKPRGPMSDAQLSY
LEHKSKLRRTQLQRPVQQSSLLSEKAQQHGPQQEQDHSFPSDALKKGSDTFKPFTGPDDP
RRNDRPPSLTGPPFRNSPSPVSCDGSVGKSSSLPFEGSAQSIDLDQLEDGDISPRFESPN
SVHSDTGPDNDAPLGLDATSRHEILSGPGRVGRSLNESPGQTPPHVSEGLSTQVNMPRHD
GANVPPRFDGHMSSHSQFEGTHSLMGQPRPEGPSRPHPPARYEGNAGPGRYDGPAAHGPP
RFEGHGRYDGPGPHRFERPPQLKGPGRYENQSVPHGSIRFTEPHGRFEGPGSGRFDGPVR
HQGPGRFDGPGPVRYNSPMQSNRFDGPARFENPHIPQGPPGGFEGPIRYPSGMVNYEGPR
RLEGPGNQSGMMRFDNPAQPAPMRFDGQPSGMPRFDSTPQGPPRYHGPTNMQNAFRPQGQ
MMMIDQPQNQGPMLNPAIPPHNFNIGAPNAFENQPLPFHMQPNVSQGSSFNVPEPTPSGF
QNTYRPVGPFPGTAPANHPQPIPVMPAPVQNFGPPNPAPFNPPGSQFVQPESHLGQMDVN
DLMAKLIDFGIIKPTPTDSNNESTSVTQSQSVPEEEEQEEEEQDDDDTLPDLTGFVVDDM
KQRHESVITKLYTGIQCYSCGMRFTASQTDIYADHLDWHYRQNRSEKDISRKVTHRRWYY
SLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKNQEAAKEREFQSVKAAADVVHESCEIC
QEQFEMYWEEDEEEWHLKNAIRVDEKTYHPLCYEDYTKTSSFVDSTPSPNKMLTENPLNA
FLKQEREGEGSCCSIKEEPTEGDTDAVTVKQEVEDESEGGSQTISAIPF
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaagctgcgagggaagacgcctgtcgagagtatcagtcgtctcttgaagac
ttgactttcaacagcaaaccgcacatcaacatgctgaccatcctcgctgaagagaatctc
cagttcgccgaggatatcgtcgctataattgaagcacaaattgccaaggcgcctcctgct
gagaagcttcctgttttgtacttagtggattccatagtgaagaatgttggaggacagtac
cttgaagtgtttactaaaaacctaatcacttcctttatatgtgtgtttgagaaggtggat
gaaaacactagaaaatgtcttttcaaattgcgttccacctgggacgaaattttcgccttg
aagaagctgtatgcattggatgttcgtgtgaactcgctagatcctgcttggcccattaag
cctttaccaccaaatgtgaacgccagcattcatgtcaaccccaaatttttaaagtcgact
gaagaactagctcctcatcccacagtcactgagaagaatttggcagaggaacaaataata
aggcaacagttgcttgccaagcaaaaacagttgttagaacttcaacagaagaagatagag
cttgaacttgaacaaacaaaagcgcaactggcggccagtacaaaccacccaccccacaat
ggtccagtcaagtctgagccaccagctgtgagtcagccaggtcctgcacaacacaagtca
cggcctccaccacaagcagacaagccatcaaacagagatcctagattaaacagagcttcc
gccccatccgtaattataaaggaacatgggccgttcaggaaggagaaccaaggcacaccg
cctgttgtcaatgcacctgaaaagagagtacctgtacctccagaaaggccaagtaagcta
atgagaataccaaaaaaagatacctctgcagctgatgaaaaagcaaagtccaagtcggtg
tcaccattaagcaaaggagtctttcataaaagcaaagactctgaacctgagcaccaaaag
acattagatgttaataaaaaggacccaaggttgcgaaagcagatgcacgagaagacggat
ctgaaagaggatgaagtcaaggaaaagaaaaaaagtaaagagcgggaagacattggcaaa
ggcaccgagccacagcggtccagcaactccagaggcaagctagtaaatgggggtctcaat
aagcatgaccggtttgatacttttcaaaaacaagatattaaagtcaataaaacaaacatc
aggaaaaggtctcggtctagatctcgttctccaccttcgcactttcctaaaagaaaagac
aggcggtccccaaagagaagaacgaggagcatcactccacctccaaaatccggaaaggct
aggcagttaagcaaacatatcgaagaggataaccaacaagtgaatgtcagggaggatcgg
agcgcaccaaagaagaatgtttctgagttgaggcggataaaaagaccactggaagataga
actcctgagcacagagatgtccagccacagagggcattatctgtagagcataaaagtgca
aaagacatcaagagatggaggagtggatgggaagaaaataaacctcttaaacaactcgat
ccagatatctcacacggcaaacctgggccacaaaggcataaagcgtggaacagctatcag
agaccacccccgataccacggacactgaaacagcaccgtctgagtgttgatgcaaacttg
caaattccagaagtgcttaattcggccagcaagagagatcttttacgaaaggctagccag
cgattggattctggcgagctaacccaggaagaattccttaacgtggcccatcaaatcaag
caaatatttcagtatcaagaagaaagacagcgctctgattcttgggagggaacgaatgat
gatggtgcttgcacaagaaagaaaccccgtggtcctatgtctgacgctcagctctcttac
cttgagcacaagtcgaagctgagaagaacacagctgcaacgcccagttcagcagagttca
ctattgagtgagaaagcgcaacagcatgggcctcaacaagagcaagatcattcattcccc
tcagacgcactaaaaaagggcagtgacacctttaaaccattcacagggcctgatgaccct
agaagaaatgacagaccaccatctctaacaggacccccttttagaaattccccaagtccg
gtcagttgtgatggaagcgttgggaaatcttcaagtctgccatttgaaggatcagcacaa
tccatagatctggatcaacttgaggacggagatatcagtcccaggttcgaaagtcctaac
agcgttcactctgatacggggccggacaatgatgctccactaggtttagatgctacttca
aggcatgaaattttgtctggacctgggagagttggccgaagccttaatgaatctcctggc
cagacaccgcctcacgtctctgaaggccttagcacacaagtaaatatgccaagacatgat
ggtgcaaatgtcccgccaagattcgatggccatatgagttcccattctcagtttgaagga
acacacagccttatgggacagccacgaccagagggtccgtccaggcctcatcctccagca
agatatgagggaaatgcaggtccggggagatatgacggtccagctgctcacggtccacct
aggtttgagggacatggccgatatgatggtcctggaccacacaggtttgaaagaccccca
cagctgaaagggcctggaagatatgagaaccagtcagtgccacatgggtcgattaggttt
acagagcctcatggccgattcgaagggccaggatcaggtcgttttgatggtccagtgcga
catcaaggtcctggaagatttgatggcccaggacccgtgcggtacaacagtccaatgcag
tcaaacagatttgatggccctgcaaggtttgagaacccccatataccacaaggccctcct
ggaggatttgaagggccaataaggtatccttccgggatggtaaattacgagggaccaagg
agacttgaagggccaggcaatcagtcaggcatgatgcgcttcgacaacccagcacaacca
gcaccaatgagatttgatggacaaccctctggcatgccaagatttgactctacaccacag
ggtcctccacgataccatggacctacaaacatgcaaaacgcattcagaccacaagggcag
atgatgatgattgaccagcctcagaatcagggtccaatgttaaatcctgccattccaccc
cacaattttaacataggagcacctaatgcctttgaaaatcaaccactgccatttcacatg
caaccaaacgtctcacaggggtccagctttaatgtgccagaacccacaccttcaggattt
cagaatacgtacaggcccgttggtccatttcctggcactgctcctgcaaaccaccctcag
cctattcctgttatgcctgctccagttcagaactttggaccaccaaacccagcgcctttc
aacccaccaggttcacagtttgtacagcctgagagtcatctgggccaaatggatgttaat
gatctgatggctaaactgatagactttggaataatcaaaccaacaccaacagactctaac
aacgagtccacatctgtgactcagtctcagagtgtaccagaagaagaggaacaagaggag
gaggaacaggacgatgacgatactctccctgatttgaccggctttgttgtcgatgacatg
aaacagagacatgaaagtgtcatcaccaaactgtatactggaatccagtgttactcctgt
gggatgcgctttactgcgtctcagactgatatctacgccgatcacttggattggcactac
agacaaaaccgctcggagaaggacatcagtaggaaagtaacgcaccgacggtggtactac
agtctcacagactggattgaatttgaagaaatcgctgatctcgaggagagggcaaagagc
cagttctttgaaaaagttcatgaggaggttgtccagaagaaccaggaagctgctaaagag
agagaattccagagtgtgaaggctgcagcagatgtcgttcatgaatcttgtgagatttgc
caagagcagtttgagatgtactgggaagaagacgaggaggaatggcacctgaagaacgcc
atcagagttgatgaaaagacataccatcccttgtgttacgaagactacacaaaaacctct
tcctttgtggattctaccccatcccccaataagatgctcacagaaaaccctttaaatgct
ttcttaaaacaagagagagaaggtgaggggtcatgctgcagtattaaagaagagccaact
gagggagacacagatgctgtaacggtaaaacaggaggttgaggatgagtcggaaggaggg
tcacaaacgattagtgcaattccattttaa
DBGET
integrated database retrieval system
