Ictalurus furcatus (blue catfish): 128622876
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Entry
128622876 CDS
T09387
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A
KO
K08524
retinoid X receptor alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03320
PPAR signaling pathway
ifu04148
Efferocytosis
ifu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128622876 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
128622876 (rxraa)
03320 PPAR signaling pathway
128622876 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128622876 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ifu03310
]
128622876 (rxraa)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
128622876 (rxraa)
Nuclear receptors [BR:
ifu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
128622876 (rxraa)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
128622876
NCBI-ProteinID:
XP_053505637
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Position
18:complement(5488184..5595548)
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AA seq
500 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPPQRGRSGESCSCFSGMCPLHQRRLSTDSGHVTSSPLSSP
TSHRPMHPPLLSPTSIGASGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMASPGMAYG
PSVSPQLNSPMNSVSSSEDIKPPVGINGMMKVPAQSSGTPLSLTKHICAICGDRSSGKHY
GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREVFLH
TAVQEERQRAKDRNENEVESSSSANEDMPVEKILEAELAVEPKTETYIETNLGVPSNSPN
DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKD
GILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG
LSNPSEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLMEMLEAPHQMT
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcttatcattggggttcctgaaaccccagtgctcgctggcgccg
ccccctcagagaggccgctcgggggaatcctgctcctgtttcagcggcatgtgtcctctc
catcagcgcagactctccacagactcgggtcatgtgacctcgtctcctctgagctctccc
acgtcccaccggcccatgcatcctcccctgctgagtccgacctccatcggagcctcagga
tcccttcactcacccatcagcacactcagctcgccgatgaacggcctcggctctcccttt
tccgtcatcagctcacccatgggcccgcactccatggcatctcccggcatggcctacggt
cccagtgtaagcccacagttgaactcgccgatgaactccgtgagcagctcagaggacatc
aagcctccggtgggcataaatggcatgatgaaggtgccagcgcagtcttcggggacccct
ctgtctctcaccaagcacatctgtgctatctgcggagatcgctcctctggtaaacactac
ggcgtctacagctgcgagggctgcaaggggttctttaagagaactgtacggaaggacctg
acctacacctgcagagacaacaaggactgtgtgatcgacaagcgccagcgaaaccgctgc
caatactgccgctatcagaaatgcctagccatgggcatgaagagagaagtttttttgcat
acagccgttcaggaggagcgccagcgagccaaggatcgaaatgagaatgaggtggagtca
agcagcagcgctaacgaggacatgcccgtggagaagatcctagaagccgaactcgccgtt
gagcccaagaccgagacgtacatcgagaccaacctgggtgtgccatccaattcgcccaat
gatccagtcactaatatctgccaggcggcagacaaacagctcttcaccctggtggaatgg
gccaagaggatcccgcatttctctgaactgcctctggacgatcaggtcatcctgctgcga
gcaggctggaacgagttgctcattgcgtcgttctcgcaccgctccatagccgtaaaggac
ggtattctgctggccactgggcttcacgtgcacaggaacagcgcccacagcgccggagta
ggagccatatttgacagagtgctcacagagttggtgtcaaagatgagggacatgcagatg
gataaaacagagctgggctgcctacgagccatagtgctgtttaacccagactccaaaggc
ctgtcgaaccccagtgaggtggaagctctgagggagaaggtttacgcctctctggaggcg
tactgcaagcagaagtaccctgatcaacccgggaggtttgcgaagctgttgctgcggctg
ccggcgctgcgttccatcggcctcaagtgtctagaacacttgttctttttcaagctcatc
ggggacacgcccatcgacaccttcctcatggagatgctggaggcgccccatcaaatgacg
taa
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