Ictalurus furcatus (blue catfish): 128623622
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Entry
128623622 CDS
T09387
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128623622 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
128623622 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128623622 (lsm8)
03041 Spliceosome [BR:
ifu03041
]
128623622 (lsm8)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128623622 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
128623622 (lsm8)
Spliceosome [BR:
ifu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
128623622 (lsm8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
128623622
NCBI-ProteinID:
XP_053506733
LinkDB
All DBs
Position
19:complement(19892908..19900115)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgcgcttgagagttatataaaccggactgtcgccatcattacatcagatgga
cgaatgattgtgggaacactaaagggctttgaccagacgatcaacctcatcttggatgaa
agccatgagcgtgtgttcagctcctcccagggagtggagcaggttgtgctgggactgtac
atcgttagaggagataatgtggctgttattggtgaaatcgatgaggaaacggactctgca
ctggatcttggcaatataagggcagaaccacttaactctgtagtgcactaa
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