Ictalurus furcatus (blue catfish): 128623949
Help
Entry
128623949 CDS
T09387
Symbol
scn12aa
Name
(RefSeq) sodium channel, voltage gated, type XII, alpha a
KO
K04838
voltage-gated sodium channel type V alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04261
Adrenergic signaling in cardiomyocytes
ifu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
128623949 (scn12aa)
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
128623949 (scn12aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ifu04040
]
128623949 (scn12aa)
Ion channels [BR:
ifu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128623949 (scn12aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
Na_trans_cytopl
PKD_channel
GPHH
IQ
ADGRF2P_N
Motif
Other DBs
NCBI-GeneID:
128623949
NCBI-ProteinID:
XP_053507140
LinkDB
All DBs
Position
20:17586634..17621620
Genome browser
AA seq
1927 aa
AA seq
DB search
MATILLPVGSDGLRPFTLESLLGIEHRIAEEQAKNSKDSPESCAKAEHPKAQADLEAGKV
LPRIFGDIPAGLVGVPLEDIDPFYFNNQKTFIVLNKGKAIFRFNATSALYIFSPFHIIRR
IAIRILVHSLFSLFIMCTILTNCFFMAMSDPAQWTKYLEYTFTGIYTFESFIKILARGFC
IGPFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVRKLADVMILTVFCLSVFALIGLQLFMGVLRQKCVRSTAHCVNSTYPGNGSFFCNN
KTWHSIKDFISSEENFYKIEGAKDALICGYSSDAGKCPDGFECLKMGRNPNYGYTSFDSF
GWAFLALFRLMTQDYWENLYHQTLRSAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYEE
QNQATIAEAWQKEREFQLAMDQLRRDPMALGKRSKEAELSPFQEMSPSPFSCTESREHRS
RSYRTVSEEAEDDPPDEKFVHSLLATLSSHPLSTRRGSNSSVFTFHLRKNSEADDQTSVL
YEGRSRAGSTVIPWHKRRTSSIRSHCSQAVKPSFAINGRLELLPDQNTIGGISPHTPTLF
PAHSMEKVKEELACLEDHAYEVSKSMQQGKIEALSPCMKRELSSVSFFSDALDEFEETHQ
KCPPCWYVFAKKYLIWTCSPAWLGLKELVKVMVMDPFLDLAITICIVLNTLFMALEHYPM
TEEFNGMLSVGNLVFTGIFTAEMAMKLIALDPYYYFQQGWNIFDGIIVCLSLMELGLSNV
EGLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLF
GKNYQDCVCKISTDCTLPRWHMKDFFHSFLIVFRVLCGEWIETMWDCMEVAGQPLCILVF
MLVMVIGNLVVLNLFLALLLSSFSSDNLSAPEEDGEMNNLQIAIARIYSGLSWILGVIKD
FFNGNLATHWHTNKQAQATGKGHGTNHVECNGTVGRISSYAEKHVTSEREDSYMTNPSLN
ICVPIAPGESDMEFPEEEEDGTETSEDEVNNPEVISLSEGSTVDLRNPEGEDEDIQLAGD
TMEPEECLPEFCMRRCEWCDINTNRGLGLVWWRLRKTCYQIVEHSWFETFIIFMILLSSG
ALAFEDIYIEQKKVVKVVLEYADKVFTYVFVLEMLLKWIAYGFKKYFTNYWCWLDFLIVD
VSLISLVANSLGYSDFGAIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLV
CLIFWLIFSIMGVNLFAGKFGKCVNRTGYIHNASIVNNKSDCLAMNNTQFYWTRVKVNFD
NVGLGYLSLLQVATFKGWMEIMYAAVDSRGVEEQPIQEINLYMYLYFVIFIIFGSFFTLN
LFIGVIIDNFNQQKRKIGGHDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNILQGFFFD
LVSKQAFDITIMMLIILNMITMMLETDEQSPRMESILNNINLAFIVIFSTECLIKIFALR
CYFFTISWNIFDFVVVILSIVGIVLADIIEKYFVSPTLFRVIRLARIGRVLRLIRAAKGI
RTLLFALMMSLPALFNIGLLLFLVMFIYAVFGMANFAYVKKHGGIDDMFNFETFGNSIIC
LFQITTSAGWDNLLDPILSNSPEECNPHIVNTGTNTKGNCGNPSVGITFFVSYIIISFLI
VVNMYIAIILENFSVATEESTEPLSEDDFEMFYEVWEKFDVEATHFIEYSKLSSFADTLS
EPLRIAKPNKLKLISMDLPMVSGDKIHCLDILFAFTKRVLGESGEMDALKQQMEEKFMIS
NPSKTSYEPITTTLRRKQEEVSATMIQRAYRRHLVRQQIKNVSYLYQQINQEASVDVAHV
QEKQGLIAHLIKEHYDNEEELVEGSQHSSPPSYEAVTMSPTGSFQVLMPASRNLVDCDSC
NTEETCL
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatactgctaccagtgggttcggatggcttgcgcccattcactctcgagtcc
cttttgggcattgagcacaggattgcagaagagcaagccaagaactccaaggattcccca
gagtcctgtgcgaaagcagagcatcccaaagcccaagcagacctggaagctgggaaggtg
cttcctcgaatctttggtgatattcctgcaggtctggtaggagtcccactggaagacatt
gaccctttttacttcaacaatcaaaagacctttattgtgctaaataaggggaaggccatc
ttccgcttcaatgccacatcggccctgtacatatttagcccatttcacatcatcagaaga
atcgccataaggatactagtccattcattgtttagtttgttcattatgtgcacaattttg
accaactgtttctttatggccatgtcggaccctgcgcaatggaccaagtatctggaatat
acattcactggcatttatacgtttgagtcattcattaagatcttggcaagaggattctgt
attggacctttcacgttcctcagagacccatggaactggttggacttcagtgtcattgtt
atggcatatgtgacagagtttgtggatcttggcaatgtctcagcattacgaacattcaga
gtcctgcgagccctaaaaaccatatccgtcatcccaggtctgaagaccattgtgggagct
ctgatccagtcggtaaggaagctagcagacgtgatgatcctgactgtcttctgccttagt
gtctttgctctgattggtctccagctcttcatgggtgtcctacggcagaaatgtgttcgc
agcaccgctcactgtgtaaactccacatacccaggaaatggaagctttttctgtaacaac
aagacctggcactccataaaggacttcattagcagtgaagaaaacttctacaaaattgaa
ggagccaaggatgccttaatatgtggatatagcagtgatgctggaaagtgccctgatggg
tttgagtgtttgaagatggggagaaacccaaactatggctacacgagttttgacagtttt
ggctgggccttcctagcgctctttagactaatgacacaagactactgggaaaacctctac
caccagactctacgttcagctggtaagacctacatgatctttttcgtgctggtgatcttc
ctgggctcgttctatctggtaaacctgattctggctgtagtggccatggcatatgaggaa
cagaaccaggccaccattgctgaggcctggcaaaaagagagagagttccagctggccatg
gaccagcttcgcagagacccgatggcattaggaaagcgaagcaaggaagccgaactgagt
ccatttcaagagatgtctccatcaccatttagttgcactgagtccagagagcatagatcc
agatcctacagaaccgtgtcagaggaagcagaagatgatcctcctgatgagaagtttgtg
cactcactcctagccacgctctcctcccatcctttgagcacacggaggggcagcaatagc
agtgtgttcactttccatctgcgcaaaaactctgaggctgatgatcaaaccagtgtcctc
tatgagggacggagtcgggcaggatccacagtgataccatggcacaagcgccgcacaagc
agcattaggagccactgttcccaggctgttaaacccagctttgccatcaatggccggctt
gaacttttgccggaccagaatacaattggtggcatcagcccacacacacctaccttattt
cctgcacacagcatggaaaaggtcaaagaggagctggcatgtttagaagaccatgcttat
gaagtcagcaaatccatgcagcaagggaagatagaagctctgtctccctgcatgaagcga
gaactcagctcagtcagtttcttcagtgatgcattggatgagtttgaagagacacatcag
aagtgtcctccttgctggtacgtgtttgctaaaaagtatctgatatggacgtgctctcca
gcatggcttggtctgaaggagttagtaaaggtcatggtgatggatcctttcctggacctg
gccatcactatctgcattgtgctcaacacgctctttatggctctggagcattaccccatg
actgaggaatttaatggcatgctgagtgtggggaacctggtgttcactgggatcttcaca
gctgagatggcaatgaagctcattgcactggacccatactactacttccagcaaggctgg
aacatctttgatgggattattgtttgcttgagtttgatggaacttggtctgtccaatgtt
gagggattatcagtgctccgttcattcagactgctgagagtcttcaaactggccaagtca
tggccaacactcaataccctgataaaaatcatcggcaactctgtgggtgccctgggcaat
ttgaccctcgtcctggccatcatcgtcttcatctttgctgtggttggcatgcagctgttt
gggaagaactaccaggactgcgtgtgtaagattagcacggactgtactctgccacgctgg
cacatgaaggacttcttccactcgtttctgattgtgttccgtgtgctgtgcggtgaatgg
atcgagacgatgtgggactgcatggaggtggctggccagccactgtgcatcctcgtcttc
atgctggttatggtcattggaaacctggtggttctgaacctcttcctggctctgttgctg
agctccttcagctctgataacctgtctgctccagaggaggatggtgagatgaacaaccta
caaatagccattgcacgcatatattctggcctcagctggatcctgggagtcatcaaggat
ttcttcaacggcaacctggccacacactggcacacgaataagcaagcccaggcaaccggg
aagggtcatggcaccaaccatgttgaatgcaatgggactgttgggagaatcagcagttat
gcagagaaacatgtcacttcagaaagggaggacagctacatgaccaatcccagcttgaac
atatgtgttccaatagcacctggagaatcagacatggagtttcctgaggaagaggaagat
ggcacagagacatcagaagatgaagtaaacaatccagaagtgatcagcctgtcagaagga
agtactgtggatctgaggaatccagaaggagaagatgaggacatccagctagctggtgac
accatggagccagaagagtgtctccctgagttctgtatgcgtcgctgtgaatggtgcgac
atcaacacgaaccggggtctaggcctggtctggtggaggctgaggaagacctgctaccaa
attgtggagcacagctggtttgaaaccttcatcatctttatgatactcctcagcagcgga
gctctggcgtttgaagacatatatattgaacagaagaaggtggtgaaagtggtgctagaa
tacgcggacaaggtcttcacctacgtctttgtgttggagatgcttctgaaatggattgca
tatggttttaagaagtacttcacaaactactggtgctggctagatttcctgatagtggat
gtatcgctaattagcttggtggctaattctctgggctactcagactttggagctattaaa
tccctgcggaccctgagagcccttagaccactcagagccctgtccagatttgaaggaatg
cgggtggtggtgaatgcactaattggtgccatcccctccatcatgaacgtgctgctggta
tgtctgatcttctggcttatcttcagcatcatgggtgtcaatctctttgctgggaaattt
ggaaagtgtgtcaacaggacaggctacatccataacgcctcaattgtgaacaataaatca
gattgcctggccatgaacaacactcagttctactggaccagggtgaaggttaacttcgac
aatgtagggttgggctacctctcacttttacaagtcgcaactttcaaaggctggatggag
atcatgtatgcagcagtggattcacgcggggtagaagagcagcccattcaggagattaac
ctgtacatgtacctttactttgtcatcttcatcatcttcggctcattcttcactctaaat
ttatttattggtgtaattatcgacaacttcaatcagcagaagagaaagataggtggacat
gacatctttatgactgaagaacagaaaaagtattataatgcgatgaaaaagctgggatca
aaaaagccacagaagcccataccaaggccaacgaatattctgcaaggtttcttctttgat
ttggtctccaaacaagcatttgacatcacaatcatgatgctgatcatcttgaacatgatc
accatgatgctagagacggacgagcagtctcctcgcatggagtccattctcaacaacatc
aacctggctttcatcgtcatcttttccacggaatgcctcattaagatctttgctctccgc
tgctacttcttcaccatcagctggaacatcttcgactttgtagtggtcatcctttctatt
gttggaattgtcctggccgatatcatcgagaaatacttcgtgtctccaaccttatttcgg
gtgatcaggcttgccagaattggacgggtcctcaggctcatacgagcagccaaaggaata
aggacgttactctttgccttaatgatgtcactgccagccctctttaacattggccttctg
ctgttccttgtcatgtttatttatgccgtttttgggatggccaactttgcctatgtgaag
aagcatggtgggatcgatgacatgtttaactttgaaacctttggaaacagtattatatgc
ctgttccagatcaccacctctgctggctgggacaacttgctggatcctattctaagcaac
tcgccagaggaatgtaacccacacatcgtcaacacaggtactaatacaaagggcaattgt
ggaaacccctcagtgggaattaccttttttgttagctacatcatcatctccttcctcatt
gttgttaacatgtacattgccatcatcttggagaacttcagtgtagccacagaggagagc
accgagcctcttagtgaggatgactttgagatgttctacgaggtatgggagaagtttgat
gtggaagcaacgcatttcattgagtactcgaagctttccagttttgcagatacactttca
gagcccctgcgaattgccaaacccaacaagctcaagctgatttcaatggatctacccatg
gtaagtggagacaagatccactgcctggacatccttttcgccttcaccaaacgtgtactg
ggtgagtcgggtgagatggatgccctcaagcagcagatggaggagaagtttatgatatcc
aatccatccaagacctcctatgaacccattaccaccactctccggcgcaagcaggaggag
gtctcggccaccatgatccagcgggcatacaggagacacctagtcaggcagcagataaag
aacgtttcttatctgtaccaacaaataaaccaagaggcatcagtggacgtggcgcatgtg
caagaaaaacagggcctcattgcacatttgattaaggagcattatgacaatgaggaggag
ctggttgaggggtctcagcactcctcccctccttcctatgaggctgtcaccatgtctcca
actggatcattccaggtgctgatgcctgcctccaggaaccttgtagattgtgattcttgc
aacactgaagaaacctgtctgtaa
DBGET
integrated database retrieval system
