Ictalurus furcatus (blue catfish): 128623973
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Entry
128623973 CDS
T09387
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03030
DNA replication
ifu03410
Base excision repair
ifu03420
Nucleotide excision repair
ifu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128623973 (lig1)
03410 Base excision repair
128623973 (lig1)
03420 Nucleotide excision repair
128623973 (lig1)
03430 Mismatch repair
128623973 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ifu03032
]
128623973 (lig1)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128623973 (lig1)
Enzymes [BR:
ifu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128623973 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
128623973 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
128623973 (lig1)
DNA replication proteins [BR:
ifu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
128623973 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
128623973 (lig1)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
128623973 (lig1)
NER (nucleotide excision repair)
Other NER factors
128623973 (lig1)
MMR (mismatch excision repair)
Other MMR factors
128623973 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
128623973
NCBI-ProteinID:
XP_053507185
LinkDB
All DBs
Position
20:10542528..10591144
Genome browser
AA seq
965 aa
AA seq
DB search
MQRSISSFFQPMKCKEKDGMPKDKSESVKSPLKPQNIDQECDSPMKMSKWSRAIIDSDDE
EQQMVKEEVSKQNGRQTAILGKEKVGLVKDTVSPLSPKPLVTQTTSAVSVTSGIPETPVT
PSSTSPSSIPKRKTARKQFPKRKLDSRSDGEREKEVEGNETEGGKERKRAKIEGSSEKME
NGEEAMEVEQKNRNTVEKELLKAKDEGNMNVTNEMYEVNGKNKEMKKVTKEEKCSPERVM
KRKKEAEEEKREGSAKKKSINRFFAPRKAAVNLEKSEEKSDVEKKDGAIAAADTASEEKE
KKGKKDLEPSNQSQYDPSKAHYHPIDDACWKKRQRVPYLAVARTFEKIEEDSGRLRNIET
LSNLLRSVILLTPDDLLCCVYLCLNQLGPSYQGLELGIGETVLMKAVAQATGRQLDKIKT
EAQEKGDLGLVAESSRSNQRMMFAPANLTAMGVFSKLKEIGNMSGNSAMSKKIDIIKGLF
VACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLSPPGQDFPPAVIDAGKGMSAES
KRAWLEEKGLILKQTYCEMPNYDAIIPVMLKLGIDELPNHCKLTPGVPLRPMLAHPTKGV
GEVMKRFDETAFTCEYKYDGERAQIHILYSGEVRIFSRNQEDNTSKYPDIISRMPQVKKE
SVRSFVLDSEVVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLV
REPLSKRRALLRQSFTEKEGEFVFARSLDSDNTETIAEFLEQSIRDSCEGLMVKTLEKDA
TYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSYGGFLLGCYDDENEEFQ
SVCKIGTGFKDEDLEQHYNFLKEHVLPKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSL
SPVYKAAMGLVDPDKGISLRFPRFLRIRDDKKPEDATTGAQIADLYRKQQQIQNQGDKAD
LEDYY
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcgtccttctttcagccaatgaagtgtaaggagaaggatggcatg
cccaaggataaatctgagtcagttaaaagccccctcaagcctcagaacattgatcaggaa
tgtgattcaccaatgaaaatgagtaagtggagccgagcaatcatagacagtgatgacgaa
gagcagcagatggtaaaagaagaggtttccaaacaaaatggaaggcaaacagccatacta
ggcaaagagaaggttggtcttgttaaggatacagtcagtccactctcaccaaagcccctt
gttacccagacaacctctgctgtttcagtaacttctggcatccctgaaacacctgttacc
ccaagttccacttcaccttccagcatcccaaaacgcaagactgcccgtaagcagtttccc
aagaggaaattggacagcaggagtgatggagagagagaaaaggaggtggaaggaaacgag
acagagggaggaaaggagcgtaaacgagcaaaaatagaaggatcttctgaaaagatggag
aatggtgaagaggctatggaggtggagcaaaagaacagaaatacagtggagaaagaacta
ctgaaagcaaaggatgagggaaacatgaatgtgactaatgagatgtatgaagtgaatggg
aagaataaagaaatgaaaaaagtaacaaaggaggaaaaatgcagtcctgaaagagttatg
aagagaaagaaggaagcagaggaggaaaagagagagggatctgctaagaaaaaatccatc
aaccgtttctttgcacccagaaaagctgcagtgaaccttgaaaaatcagaagagaaaagt
gatgtagagaagaaggatggtgcgattgctgcagctgatactgcttctgaggagaaagaa
aagaagggtaagaaggatctggaaccttcaaaccagagccaatatgatccatctaaagct
cactaccatcccattgatgatgcttgctggaagaagaggcagagagttccatatctggct
gttgctcggacatttgagaagattgaggaagattctggcaggttgagaaacattgagact
ctgtccaaccttctgcggtctgttatcctactcactccagacgacctcttgtgctgtgtg
tacctgtgtctgaatcagcttggcccctcctaccaggggctagagctaggcataggggaa
acagtactgatgaaggctgttgcccaggcaactgggcgtcagctggacaaaatcaagact
gaggcccaggaaaaaggtgacctgggattagtagccgagagttcccgtagtaaccagaga
atgatgtttgcaccagcgaatctgactgcaatgggtgtgttcagcaaactcaaggagatt
ggcaatatgagtggaaactcagcaatgagtaagaaaattgacatcattaagggtctgttt
gtggcttgtcgtttctcagaggccagatacattgtacggtcattggcaggcaaactgagg
attggattggctgagcagagtgttttagcagctcttagtcaagctgtatgtctgagtcca
ccaggccaagatttcccaccagctgtgattgatgcaggaaaggggatgagtgcagagagc
aagagagcatggcttgaggaaaaaggactcattcttaagcagacttactgtgaaatgccg
aattacgatgccataatccctgtcatgttgaagttgggcatagatgaactgcctaatcac
tgcaaacttactccaggtgtgccactgcgccccatgctggcccacccaactaaaggagta
ggggaggtgatgaaaaggtttgatgaaactgctttcacctgtgaatacaagtatgatggg
gagagagcacagattcacattctttatagtggtgaggttcgtatcttcagccgaaaccaa
gaggacaacaccagcaagtaccctgacatcatttcacggatgccacaggtaaagaaggaa
tctgtgcgtagctttgtgttggactcagaggtggttgcatgggacagagagaaaaagcag
attcagccgtttcaagttctgaccacacgcaaaaggaaggatgtggatgcatctgagatt
aaggtgcaggtttgtgtgtatgcctttgacctgctgtacttaaatggagagtctctggta
cgggagcctttgagtaagcgtcgagctttgttgagacagagtttcacggagaaggaggga
gaatttgtctttgctcgttctcttgactctgataacactgaaactatagcggagttcctg
gagcagtccatacgagactcttgcgaaggcttgatggtgaagaccttggagaaagatgcc
acttacgaaattgccaaacgctctcataactggcttaagcttaagaaggattatctggaa
ggtgtcggggacacagtggatctgtgtgtgattggtgcatatctagggaagggcaagaga
gccggtagctatgggggtttcctgcttggctgctatgatgatgagaatgaggagtttcag
tccgtctgtaagataggtacaggtttcaaagatgaagatctggagcagcattacaatttc
ttaaaggagcacgtccttcctaagcctcgcccctactacagagtggaccagtcagcagag
ccagatgtttggctggatgctgtgcaagtgtgggaagtgaaatgtgctgatttgtcattg
tctccggtttacaaggcagcaatgggattggtggacccagataaagggatttcccttcgc
tttcctcgattccttcgcatcagagatgacaagaaaccagaggatgctactacaggagcg
cagatagctgatctctacagaaagcagcagcagattcagaatcaaggagataaggctgat
ctagaggattactactga
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