Ictalurus furcatus (blue catfish): 128624033
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Entry
128624033 CDS
T09387
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04010
MAPK signaling pathway
ifu04210
Apoptosis
ifu04218
Cellular senescence
ifu04620
Toll-like receptor signaling pathway
ifu04621
NOD-like receptor signaling pathway
ifu04622
RIG-I-like receptor signaling pathway
ifu04623
Cytosolic DNA-sensing pathway
ifu04625
C-type lectin receptor signaling pathway
ifu04920
Adipocytokine signaling pathway
ifu05132
Salmonella infection
ifu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128624033 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
128624033 (nfkb1)
04218 Cellular senescence
128624033 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128624033 (nfkb1)
04621 NOD-like receptor signaling pathway
128624033 (nfkb1)
04622 RIG-I-like receptor signaling pathway
128624033 (nfkb1)
04623 Cytosolic DNA-sensing pathway
128624033 (nfkb1)
04625 C-type lectin receptor signaling pathway
128624033 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
128624033 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128624033 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
128624033 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128624033 (nfkb1)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
128624033 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
128624033
NCBI-ProteinID:
XP_053507289
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All DBs
Position
2:complement(17527915..17564804)
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AA seq
933 aa
AA seq
DB search
MNEEDAYLPGHQEFFDFDPHWIPVDPGFAAVPTSNPLRMEGPCLQITEQPKQRGFRFRYG
CEGPSHGGLPGACSEKNRKTYPQVKICHYQGPARIVVQLVTNSKQPHLHAHSLVGKQCDK
GICVAELQPKDSSISFPNLGILHVTKKNVSKTLEERMSEAYRLGYNYGVVIHPDIDSFQG
ETRLPRELTDHQRNLICNAAANQAKDMDLSVVRLMFTAFLPDSEGGFTRRLEPVISEPIY
DSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGIVWEAFGDF
SPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDNETSEPKPFTYHPQIIDKEEVQ
RKRQKTLPNFPDYSGGGGVGGMYRGPGGGATSGGSHGGGGGGGGGGGHYYQGYYNNFNSG
YGFPPAMGGGGSGIKHSNNGPVEDTDEESDGDVDDDPGTGGVCVQPIFLASEEMSEESEG
LEESDVCETETTDCVFEPRLAELAQRHTGALFDYAISGDIRRLLVPQRPLMTAQDENGDT
GLHLSVIHSQTDAVKNLAEVIVAILGEDVMNMRNDLYQTPLHLAVLTEQKEAAEALMEAG
SDITLTDRHGNTVLHLAAQQKDGEMIRMLLRHQEALDLSNTHNTAGLCPLHIAVLANSLS
SVRALLEAGANVEVQERTCGRTPLHLATEHDNVSLAGCLLLEGDAEVDSLTYNGSTPLHI
AAGRGSFKLSALLIAAGADPHKENFEPLYFRDEECCREDNDEVDEGYIPGTTPLNMAASS
EVREILNGKPYQPSTVVIPPQGDMQSLGAETKQALCRCLEESAGGWESLAHTLRLGILIN
AFRLSPQPACTLLDSYEVSGGTVRELLAGLKSIGNSGAVSIMQERIVFEKTDNTQNENLT
TVGRCVSVDLQDLKLSASDDGYVCDSGVETSFQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaggacgcgtatcttccagggcaccaggagttctttgactttgatccacac
tggattccagtggacccaggatttgccgctgtgccgacatcgaacccacttcgtatggaa
ggaccttgtctccaaattacagaacaacccaaacagcggggcttcaggtttcgttacggc
tgcgagggcccgtctcacggcggactcccgggagcctgcagcgagaagaacaggaagacg
tatcctcaggtcaagatctgtcattatcagggtccagcacgaattgtggtccagctagtg
actaacagcaaacagccgcacctgcatgcgcacagccttgtgggaaaacaatgtgacaag
ggcatctgtgttgctgaactccagcccaaagactcttccatcagtttccctaacctgggt
atcctccatgtgactaagaagaacgtgagtaagactctggaggagaggatgagtgaagcc
tacaggctcggttacaactacggtgtggtcatccatccggatatcgactctttccaagga
gagacacgccttcccagagagctcacagatcaccagaggaatctgatctgcaatgccgca
gctaaccaggcaaaagacatggacctgagtgtagtgaggctcatgttcactgcatttctg
cccgacagcgagggcggcttcacacgcagactcgaaccagtcatatccgagcccatctac
gacagtaaagccccgaacgcctcgaacctgaagatcgtgcggatggaccgcactgcgggg
tgtgtgacgggtggagaagaagtatacctgctctgtgacaaagttcagaaagatgatatc
caggtgcgcttttacgaggatgacgagacgggaatcgtctgggaggcattcggggatttc
tctcccaccgacgtgcacagacagtttgccatcgtgtttaagacgccgaagtaccgcgac
cagaacctgcagaaacccatctccgtgttcgtgcagctcaagaggaagtcggacaacgag
acgagcgagcccaaaccgttcacctatcacccacagatcatagataaggaagaagtacag
aggaagagacaaaagacgctgcccaatttcccggattacagtggagggggtggagtcggg
ggcatgtatagaggaccaggaggcggggctacgtcagggggcagccatggcggaggtggt
ggaggaggaggaggtggaggtcattattaccagggttattataacaacttcaactctggc
tatggctttccaccagccatgggtggaggagggagcggaattaagcactccaataacggt
ccggtggaagacacggacgaagagagcgacggcgatgtggatgacgatccgggcacaggc
ggagtgtgtgtccagcctatatttctagcgtcggaggagatgagtgaagagagcgaaggt
ttggaggagtctgatgtgtgtgagacagaaaccacagactgtgtgtttgagccacggtta
gccgagctagcacagagacacactggggctttgttcgactacgccataagcggtgacatt
cgcaggctgctggttccacagcgccctctgatgactgctcaggatgagaacggagacacg
ggactccacttgagtgtgatccatagtcagacagatgcagtgaagaacctagcggaggtg
atagtggcgattctcggagaggatgtgatgaacatgaggaacgacctctatcagactcca
ttgcacctggccgtattgaccgagcagaaggaagcagccgaggcgttaatggaggcagga
agcgatatcactctgaccgatcgccacggcaacacggtgctccacctggccgcccagcag
aaggacggagagatgatccgaatgctgctgagacaccaagaggcgctggatttaagcaac
acacacaacacagcaggtctgtgtcctctgcatatagccgtcttggctaacagtttgagc
agtgtgagggctctgctggaggctggggctaatgtggaggttcaggagcggacatgcggt
cgcacgccgcttcacctcgctaccgaacacgacaacgtctcactcgccggatgcctgctg
ctagagggtgacgctgaagtagacagtctgacgtataacggctccacacctcttcacatc
gcagcagggcggggctctttcaaactgagcgcactgctcatcgccgcaggcgcagatcct
cataaagagaacttcgagccgctgtacttcagagacgaggagtgctgcagggaagacaat
gacgaggtggacgagggctacatcccagggacgaccccacttaacatggctgcttcatca
gaggtacgggaaatcctgaacggtaaaccgtaccagcccagcacggtcgtcatcccacca
caaggagacatgcagagtctgggtgcagagactaagcaggcgctgtgcagatgtctggag
gagtccgcaggcggctgggagagtctggcacacacactcagactgggcatcctcatcaat
gccttccgcctcagcccacagcctgcctgcacactgctggacagctacgaggtctcaggc
gggacggtgcgcgagctcttagcaggtctgaagagtatcgggaacagcggcgccgtcagc
ataatgcaggagcgcattgtgtttgagaaaaccgataacacacagaatgaaaatctgacc
acagtaggccgttgtgtctctgtagacctgcaggatctaaaattatctgcgtcagacgac
ggctatgtgtgcgacagcggcgtggagacgtccttccagtag
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