Ictalurus furcatus (blue catfish): 128624195
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Entry
128624195 CDS
T09387
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03020
RNA polymerase
ifu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128624195 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
128624195 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128624195 (polr2b)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128624195 (polr2b)
Enzymes [BR:
ifu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128624195 (polr2b)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128624195 (polr2b)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128624195 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
128624195
NCBI-ProteinID:
XP_053507616
LinkDB
All DBs
Position
2:complement(17928006..17938997)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTT
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagacgaagatatccagtatgacgaggatgatgatgagatcactcctgat
ctgtggcaggaagcctgctggattgttatcagctcttactttgatgagaaaggtttggtg
cggcagcagctagactcattcgatgagttcattcagatgtctgtgcagaggattgtggag
gacgcgccgcccatcgacctgcaggccgaggcacagcacgcctccggagaggtggaggaa
ccgcctcggtacttgctgaagttcgagcagatctacctgtccaagccgacacactgggaa
agagacggcgctccgtcacccatgatgcccaacgaagcacgactccgaaacctcacgtac
tctgctcctttatacgtggatatcaccaagacgatcataaaggagggagaggagcagcag
cagactcagcaccagaaaaccttcatcggcaaaattcccatcatgctccggtccacctac
tgcctgctgagcggcctgacagaccgtgatctgtgcgagctgaacgagtgtcctctcgat
ccgggcggctacttcataatcaacggctctgagaaggtgctgatcgcccaggagaaaatg
gccacgaatacagtgtacgtgttcgccaagaaggactcaaagtatgcctacacaggcgag
tgcaggtcctgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gccagaggtggacagggagtgaagaagagtgcgatcggtcagaggatcgtctccaccttg
ccatacatcagacaggaagttcccatcatcatcgtgttccgagcgctgggctttgtgtcc
gacagagacatcctggaacacatcatctacgactttgacgatccggagatgatggaaatg
gttaagccgtctcttgacgaggcattcgtgatccaggagcagaacgtggctctgaacttc
attgggtccaggggggccaaacccggagtcactaaagagagaaggataaaatatgccaag
gaggtgctgcagaaggaggtgctgcctcatgtcggcgtgtccgacttctgcgagaccaag
aaggcgtactttttaggttatatggtgcacaggctcctgctggcggctctgggcagaaga
gagctggacgacagagatcattacggcaacaagaggctggatctggccgggccactactg
gcgttcctattccgagggatgttcaagaacctgctgaaggagatcaggatctatgctcag
aagttcatcgaccgtgggaaagacttcaacctggagctggccatcaaaacgcgcatcatc
tccgacggcctgaagtattcgctggccacggggaactggggcgacgtcaaaaaagcccat
caggctcgagccggagtgtctcaggtgttgaacagactgacgtttgcctcgacgctttct
cacctccggcgcgtgaactcccccatcggccgagacggcaagctggccaagccgaggcag
ctccataacactctgtggggtatggtgtgtcccgccgagacgcccgagggccatgctgta
ggtctggtgaagaacttggcgctgatggcgtacatctccgtgggttctcagccatccccc
atcctggagttcttggaggagtggagcatggagaacctagaggagatctcacccgctgct
attgcggacgctacaaagatctttgtgaacggctgctgggtgggaatccacaaagacccg
gagcagctgatgaacacgctgaggaagctcaggaggcagatggacatcattgtgtctgag
gtgtcgatgatccgtgacatccgagagcgagagatccggatttacacggacgctgggcgg
atctgtcgcccactgctcatcgttgagaagcagaagctcttgctgaagagacgccacatc
gatcagctcaaagagcgagagtacaacaactacagctggcaggatctggtggcgagcggc
gtagtagagtacatcgatactctggaggaggagactgtgatgttggccatgaccccggat
gacctccaggagaagggtgtagcttactgttccacctacactcactgtgagatccatcca
tctatgatcctgggagtgtgtgcatccatcattcccttccctgatcacaatcagtctccc
aggaacacttaccagtctgctatggggaagcaggctatgggtgtgtacatcaccaacttc
cacgtgcgtatggacactctggctcatgtgctgtattacccgcagaagcctctggtcaca
acacgctccatggagtacctgcgtttcagagagctgccagcaggcatcaactctattgtg
gccattgcctcatacacgggttacaatcaagaggactccgtcatcatgaaccgttcggcc
gtggaccgaggcttcttcaggtcagtcttttaccggtcctataaagagcaggagtcgaag
aaaggcttcgaccaggaggagatttttgagaaaccgaagcgtgaggagtgtcaaggaatg
cgccatgccatctatgataagctggacgacgacggcctgatagcaccgggcgtgcgcgtg
tccggcgaggacgtgatcatcggaaagacggtcactctacctgaaaacgatgacgagctg
gacagcacgaaccggcgctacacgaagagagactgcagcacgttcctgcgcaccagcgaa
accggcatcgtcgaccaggtcatggtcacgctcaaccaggagggctacaagttctgcaag
atccgggtgcgctcggttcgaatcccccagatcggagacaagttcgccagtcgacacgga
cagaagggaacctgcgggattcagtacaggcaggaggacatgccattcacatgtgaagga
attacaccagacatcatcatcaacccccacgctatcccgtccagaatgacagtcggtcac
ttgatcgagtgtctgcagggaaaggtttctgcgaataaaggggagattggtgacgccacg
ccatttaacgacgctgtgaacgtgcagaaagtgtctaacctgctgtctgagtatggctac
cacctcagaggaaacgaggtgctgtataacggtttcacgggtcgcaagctgacctctcag
atcttcctcggccccacttactaccagcgcctcaaacacatggtggatgataagatccat
tcaagggcacgaggtcctgtccagatcctcaacaggcagcctatggagggcagatcacga
gatggaggtctacgtttcggagagatggagcgagattgtcagatcgctcatggtgcagct
cagttcctgaaggagcggctgttcgaggcatcggatccctaccaggtgcacgtgtgtaac
ctgtgtggcctcatggccatcgccaacacgcgcacacacacctatgagtgcaggggctgc
cgcaacaagactcagatctcgctggtgcggctgccgtacgcttgcaagcttctgtttcag
gagctcatgtctatgagcatcgccccacgcatgatgaccacctaa
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