Ictalurus furcatus (blue catfish): 128624489
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Entry
128624489 CDS
T09387
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ifu01001
]
128624489 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ifu04054
]
128624489 (ciita)
Enzymes [BR:
ifu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128624489 (ciita)
Protein kinases [BR:
ifu01001
]
Serine/threonine kinases: Other
TAF1 family
128624489 (ciita)
Pattern recognition receptors [BR:
ifu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128624489 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
AAA_25
nSTAND_NTPase5
nSTAND3
NB-ARC
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
128624489
NCBI-ProteinID:
XP_053508153
LinkDB
All DBs
Position
2:19250866..19274999
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AA seq
1069 aa
AA seq
DB search
MLLQYKMEARSETEPEDIMTSVDHGETMPVTDRLLDMIVSAPLEEFPFEEFLDSSYSDEV
WDDIPDEKSTLVYDGCSEISAPKEIPTRKRRVVCERAPKKTPRPKRSKRAPQSSETPPEV
NMAVQEGDFHVTGMSSLVRFPLTIATTASLMPSGAPAMQIIQTFNPLSPPVIKGILPVGH
TYVLVSPQSLAPVPMPQIAPMSPVDGTVAPLELSMSIHPVSSLSDSASRGQSPSQLAPVS
PSKDKSPSKEYLSTTQQIKKMPVIPKNVQDSIECLKLHLQKTCSMMQGGMSMESHYIDTP
LVQRKLIIRTGKNANKCLEKELVVLSDSERKKAMMHRSHVFQNYGSNNKQLITVLGKAGM
GKSTFIQRLALDWSTGGLQQFQFIFLLNCKILNLTQASYSLKSLLFDSSMFPQCEDSEAV
FKHVLAFPENVLVVFDSFDDMKDLEGLLQSTATSATDGDYSIRQLFSGLFQKKILSGCTL
LIATRPKDVLNQLLRKVDSILELCCFSPKDIEMYVSNYFVDTSEKENALRTITSQKYIFN
LCSNPLLCRLTCFLSEHQKSNGLPSTLTDLYQRVLSQHLELNDNLQGSNKDIVQLCNVAW
DGFKTQSSLLNQNQNKNLVDYGLNSGILTTRTRYEEPGNKQVTYFANLFVQNLLTALLLV
HSNEMNDKALLGQTALHQRKRKSPGEWQDMLQRFVMGLLFQKNTPPCFRVFQSSTDLQAK
RKAVEVHLENLKPGELIPSRLLELFHCVYEARNVKLAKLLVKNLPDNLSFCGAQLSPVDV
YVVWHLLLNTKGLKRTFSIDLRDTCVPLSGLKELVALDCVASFRAPTMDAINLWEDLHHS
NDKLSLKNAIDKFTINPLKVSQVSHVENLLVLVQIHNEKKLPLCEAEPALEDGVPAVRHL
HKLEYELGQQNSPEVFLRQAEVLSALQSLHHLDLENNKMGDAEAEQLAGVLSSLSSLKLL
NLSQNCIGDAGVQKLSEALPSASSLQSLSLYGNVIGDSGAESLASVLPLMTSLLDLDVKY
NKFTDIGAKKLSAALKKSSSVKSLQMWNDCVPYGVFEHLQLQDCRIKAL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgcagtataaaatggaggcacgctccgaaacagaacctgaagacatcatgacc
agtgtggatcatggggaaaccatgcctgtaacagatcgtctattggacatgatcgtctct
gctccacttgaagaatttccatttgaagaatttctcgattcaagttactcagatgaggtc
tgggacgatatcccagatgaaaaatccacactggtttatgatggatgcagtgagatttca
gctcccaaggaaataccaaccaggaagcgtcgagtagtgtgtgaaagggcaccgaagaaa
acacctcgccctaaacgcagtaaaagagccccccagagctctgaaactccccctgaagtc
aacatggctgtgcaggaaggggatttccacgtcactggcatgtcctcgcttgtacgcttc
cccttaacgattgccactaccgcctctctgatgccatctggtgcaccagcaatgcagatc
atacaaacattcaaccctctctctcctccagtgattaaaggcattctgccggtagggcac
acctatgtgctggtttctccacaatctctagctccagtgccaatgccacagattgcccct
atgtcacctgtcgatggtacagtggctcctttagagctcagcatgtccattcatcccgta
agctcattatcggacagcgcaagtaggggtcagtctccatcccaactagctcctgtttca
ccctcaaaagacaaatcaccctccaaagagtatctttctacaacccagcaaatcaagaag
atgccagtgataccaaagaatgttcaagactccattgagtgcttgaagttacacctacaa
aaaacgtgtagtatgatgcaaggaggaatgagcatggagtctcactacatagacacacca
ctggtgcaaaggaagcttatcatcagaactggcaaaaatgcaaacaaatgcttagagaag
gaacttgtggtgctcagtgattcagagcgaaagaaagccatgatgcacaggagccatgtt
ttccaaaactatggatccaataacaagcaactgatcacagtccttgggaaagccggcatg
ggaaaaagcacatttatccagcgtttggccttggactggtccaccggtggccttcagcag
ttccaattcatctttttgctgaattgcaaaattctcaatctgactcaggcgagctatagt
ctgaagagtttgctgtttgactcatccatgtttcctcagtgtgaggattcagaggccgtc
ttcaaacacgttctcgcctttcccgagaatgttctcgttgtttttgacagtttcgatgac
atgaaagaccttgaaggtcttcttcaatccaccgctacctcagccacagatggcgactac
agtatccggcagctcttttctggtttgttccagaaaaagattctgtcagggtgcacactt
ttgattgccacccgacccaaagatgtcttgaatcagctgctgcggaaagtagacagtatc
ttggagttatgttgcttttctccaaaggacatagaaatgtatgtctcaaactattttgtg
gatacatcagagaaagagaatgcactaagaacaataacaagccaaaaatatattttcaac
ttatgctcgaaccctttgctatgtcgccttacgtgctttttgtcagagcatcaaaaaagc
aatggtttgccttcgactcttacggatttataccaaagagtgctcagccagcatttagag
ctgaatgataaccttcagggatccaacaaggacattgtgcagttgtgtaacgtggcatgg
gatggatttaagacgcaaagctcccttttaaaccaaaatcaaaacaaaaacctggtagac
tacggactcaactctgggatacttacgacacgtacacgatatgaagaacctggcaacaag
caggtcacctattttgctaatctttttgtgcagaaccttctaactgctctgcttttggta
cattctaatgaaatgaatgataaagcgctgctgggtcagactgcactccaccaacgtaaa
aggaagtctccaggagaatggcaggatatgctacaaaggttcgtaatgggattactcttt
cagaaaaacacccccccctgtttcagggtcttccaaagcagtactgacctacaggccaaa
agaaaagcagtggaagtccatttggagaatctgaaaccgggcgagctgattcccagcagg
ttactggaactgtttcactgtgtgtacgaggccagaaatgtcaaacttgccaaacttctg
gtcaaaaaccttcctgacaatctgtcattttgcggagctcagctctctccagtggatgtc
tatgttgtttggcatcttcttttgaataccaaaggactcaaacggacattttccattgac
ttgagggacacgtgtgttcctctcagtggtctcaaagagctggttgcgctggactgtgtg
gcctcattccgagcacctacgatggacgccattaatctgtgggaggacctgcatcacagc
aatgataaactgagtttgaaaaatgccatcgacaagtttactataaaccctctgaaggtg
tctcaggtgtctcatgtggagaacctgctcgttcttgtacaaatccacaatgagaagaag
ctgcccttatgcgaggcggagccggctctagaggacggtgtcccagcggtgagacatctt
cacaagttggagtacgagctcggccagcagaacagtcctgaggtttttctccggcaggca
gaggtcttatctgctcttcagtctctccatcatctggatctggagaataataaaatgggg
gatgctgaagcggagcagttggccggtgtgctgagctcgctgtcgtctctgaagctgctg
aatctttctcagaactgcatcggagacgccggagtgcagaaactgtccgaggccctaccg
tccgcgtcctcgctgcagagcctcagcctgtatggaaacgtgatcggggacagcggcgct
gagagcttggcgtcagttttaccgctcatgacgtctctgctggacctggatgtgaagtac
aacaagttcacagacattggagccaaaaagctcagcgctgcattaaagaaatcgtcgagt
gtgaagtctcttcagatgtggaacgactgtgttccttacggggtttttgagcatcttcag
ctccaagactgcaggattaaagctctataa
DBGET
integrated database retrieval system
