Ictalurus furcatus (blue catfish): 128625516
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Entry
128625516 CDS
T09387
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03030
DNA replication
ifu03410
Base excision repair
ifu03420
Nucleotide excision repair
ifu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128625516 (rfc5)
03410 Base excision repair
128625516 (rfc5)
03420 Nucleotide excision repair
128625516 (rfc5)
03430 Mismatch repair
128625516 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ifu03032
]
128625516 (rfc5)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128625516 (rfc5)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128625516 (rfc5)
DNA replication proteins [BR:
ifu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128625516 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
128625516 (rfc5)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
128625516 (rfc5)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128625516 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
128625516 (rfc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_14
RuvB_N
ResIII
AAA_lid_RFC1
AAA_24
DEAD
AAA_16
AAA_assoc_2
DUF815
nSTAND_NTPase5
PhoH
ATPase_2
AAA_7
AAA_5
TIP49
AAA_30
AAA_19
TniB
nSTAND3
AAA_2
DNAX_ATPase_lid
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
128625516
NCBI-ProteinID:
XP_053509880
LinkDB
All DBs
Position
22:complement(16965825..16973315)
Genome browser
AA seq
334 aa
AA seq
DB search
MASTSKVPLQARNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQTQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNVLQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWALNKDFTSAYNQILQLKTLKGLALHDILTELHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVSDA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagcaaggtacctcttcaggccaggaacttgccatgggttgaaaagtac
agaccacagacgctggatgatttaatctcacatcaggacattctgagtacaattcagaag
ttcatcagcgaagaccgactgccacacctgctgttttacgggcccccaggaacaggaaag
acctccaccattttagcctgcgctaagcagctctacaaggataaagagttcaacgccatg
gttctggagctcaacgcttcagacgaccgcggtatagacgtggttcgaggccccatcctc
agcttcgccagcaccaggaccattttcaagaaaggttttaagttggtgattctggacgag
gcggatgccatgacccaggatgctcagaacgctttaaggagagtgatcgagaagttcacc
gagaacactcggttctgtctgatctgtaactacctgtctaaaatcatccctgcgctgcag
tcgcgatgcacgcggttccgtttcggacctctgtcccagacccagatgatccccagactc
gagcacgtcatccagcaggagagcatcgacatcactcccgatggcatgaaggctattgtg
acgctgtcaacgggagacatgaggcgatcgttaaacgtcctacagagcactcacatggcc
tatgggaaggtgaccgaggagacggtttacacgtgcacaggacatcctctgcgctcagac
atcgccaacatactcgactgggccttgaacaaagacttcacctcagcatataaccaaatc
ctacagctgaaaactctgaaaggattagcgctgcacgacatcctgaccgagctgcatctt
ctcatacacagagtggattttcctccagcgattcggatgggcttgctgattaagctggcc
gacatcgagtatcgcttggcctctggaaccagtgagaagattcagctgagttcaatggta
gctgctttccaggcagttagagatatagtggtcagtgatgcctaa
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integrated database retrieval system
