Ictalurus furcatus (blue catfish): 128625589
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Entry
128625589 CDS
T09387
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128625589 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128625589 (smarca2)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128625589 (smarca2)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128625589 (smarca2)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
128625589 (smarca2)
Chromatin remodeling factors
BAF complex
128625589 (smarca2)
PBAF complex
128625589 (smarca2)
GBAF(ncBAF) complex
128625589 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
128625589
NCBI-ProteinID:
XP_053510010
LinkDB
All DBs
Position
22:12863711..12911132
Genome browser
AA seq
1590 aa
AA seq
DB search
MSTPTDPSVGMSHPGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHGMQS
QGSGEYPQEGVHPMHKPMEGMHEKGMGDEMHYGQIKGVGMRSLHSGMGPPQSPMDQHSQG
YMSPHPSPMASSGPEHVSSPMSGGGPTPPQMSQAQPGPMMPMEPQAMGQQGRGHSAFSPV
QLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQPVNTGPYNRPPGMSGPHG
SPVSGLCSAQGVQTHAPSPGAKPWTEGQGAEACSGSQKLPVPAPSGRPSPAPPQAPTAAQ
VTPSTSLTPQSQSQPQAQQPQQQGPGQTSLIIQLQQKQNRITPIQKPQGLDPVELLQERE
YRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRDTTLE
TALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR
SISGKIQKLSKAVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLA
YLLQQTDEYVANLTSLVYEHKAAQAAKEKKKRKKKKKKEEGVIEVLGTIGPDGEPIDESS
QMSELPVKVIQTQTGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDEE
EVVSRAESEEKKIIDPSSDEVSQAAKHIIESAKQDVDDEYSVQAGETSSQSYYGVAHAVI
ERVERQSSLLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEY
KRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGMPSMRRSLLPQLRSGKFNVLITT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP
ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR
LKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTI
MQLKKICNHPYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLQSTNHRV
LLFCQMTSLMTIMEDYFAYRNFLYLRLDGTTKAEDRAALLKKFNDEGSQYFVFLLSTRAG
GLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK
YKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEVLRLSERERELSSEEDEVPD
DETLNQMIARNEEEFELFMRMDLDRRREDARNPKRKPRLMEEDELPAWIIKDDAEVERLT
CEEEKEKMFPRGSRHRRDVDYSDALTEKQWLRAIEDGNLEEMEEEIRLKKRKRRRYLDKG
SRREDGDKAKKRRGRPPAEKLSPNPPKLTKQMSAIIETVINYRDGSGRQLSEVFVQLPSR
KELPEYYELIRKPVDFKKIKERVRNHKYRSLGDLEKDVMLLCHNAQTYNLEGSQIFEDSI
VLQSVFRSARQKIAKEESEDDSNDDDDEESEAESKSVKVKIKLSKREERSQERGKKRPSR
VKAKPVVSDDDSDEEQEENEQSDGSRTEDE
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaccaactgatccgtcagtcggaatgtcccaccctggtccttcccctggtgcc
ggcctttctcctgggccaattttaggccccagtcccgggccaggcccctctccaggctct
gtccacagcatgatgggcccgagcccaggacctcctagtgtacctcatggcatgcagagc
caggggtcaggagaatatcctcaggagggcgtgcatcccatgcacaagcccatggaagga
atgcatgagaagggcatgggagacgaaatgcactatgggcagatcaaaggtgttggcatg
agatccctgcacagtggcatgggcccacctcagagtccaatggatcagcacagccaagga
tacatgtcacctcacccttccccaatggctagctccggacctgagcatgtttcaagcccc
atgtctggagggggtcctaccccacctcagatgtcccaggctcagccaggccccatgatg
ccaatggaacctcaggcaatgggacagcagggccgtggccactctgccttcagccctgtt
caactgcagcagctccgtgctcagatacttgcttacaagatcttgggccgtggacagcct
ctgcccgagaacctgcaactggctgtgcagggcaagaggagccttccaaccatgcagcag
cagcaacctgttaacactggaccttacaacaggcctccaggtatgtctgggccccatgga
agccctgtgtctggcctatgttccgctcagggcgtgcagacacacgctccaagccctggg
gcaaaaccatggacagaaggtcaaggtgctgaggcgtgtagcggctcccagaagctccct
gtgccagcccctagtggcaggccctctcctgctcctcctcaggctcccacagccgcccag
gtcacgcccagtacatctctcacaccacagtcccagtcacaaccccaagcccagcaaccc
cagcagcagggccctgggcagacctcgctcattatccagctccagcagaagcagaaccgc
atcacacccatccagaaaccacagggcctggacccagtggagcttctacaggagcgagag
tacaggttgcaggccaggattgctcatagaattcaagagctggagaatttacctggttct
ttgcctcctgacctgagaactaaagcaaccgtcgagctgaaggccttaagacttctcaat
tttcaacggcagttgcggcaggacgttgttgcttgcatgcgcagagataccactttggag
acagcattgaattccaaggcctacaagcgcagtaagaggcagacactgagagaggcgcgc
atgactgagaagctggaaaagcagcagaaaattgaacaggagagaaagcggcgtcagaaa
catcaggaataccttaacagcatcctccagcatgctaaagacttcaaggagtatcaccga
tcgatatctggaaagatccagaagttgtccaaggccgtggccacatggcataccaataca
gagagggagcaaaagaaggagacggagagaatcgagaaagagaggatgagaaggctgatg
gcggaggatgaggagggctacaggaagctgattgaccagaagaaggacaagcgtctagcc
tacctgctccagcagactgatgagtatgtggccaacctcacttccttggtctatgaacac
aaggctgcccaggctgccaaggaaaaaaagaagaggaagaagaagaagaagaaggaagaa
ggggttattgaggtacttggaacaattggacctgatggggagcccattgatgagagcagt
cagatgagtgaactcccagtcaaagtcattcagacgcagacagggaaggtactgcagggc
acagatgctcccaagtctagccagttggaggcctggcttgagatgaatcctggctatgaa
gtggccccgaggtcagatagtgaagagagcggttcagagtttgaagaggaggatgaagaa
gaagtggtctcccgggcagaatcagaagaaaagaaaattattgatcccagtagtgatgag
gtgtctcaagcagcaaaacacatcatagaatctgccaagcaagatgtggatgatgagtac
agtgtccaggcaggagagaccagctcacagtcttactatggagtagcccatgccgtcatt
gagagagtggagaggcagtcgtccttactgatcaatggcacactcaagcaataccagatc
caggggctggagtggatggtgtccctgtacaacaataacctaaatggcattctggcggat
gagatggggctggggaagaccatccaaaccattgcgctcatcacatacctaatggaatac
aagagacttaatggtccttatctgatcatcgtgccgttgtcgactttgtccaactgggtt
tatgaacttgacaagtgggcaccatccattgtgaaaattgcttacaagggcatgccatcc
atgcggcggtcactgttgcctcaacttcgtagcgggaagttcaatgtcctcataaccacc
tatgagtacatcatcaaggacaaacacattcttgctaagatccgctggaagtacatgatt
gtagatgaaggccatcgaatgaagaaccaccactgcaagcttacacaagtgttgaacacg
cattacgtcgccccacgcaggcttttgctgacaggaacccctctgcagaacaaactgcct
gaactttgggctctgctcaactttctcctgcccacaatctttaaaagttgcagcactttt
gagcagtggttcaatgctccatttgccatgaccggggaaagggtggatctgaacgaagag
gagactatcctgatcatccgccgtcttcacaaagttctgcgccctttcttgcttcgtaga
ctaaagaaggaagtggagtctcagctgcctgaaaaggtggagtatgtgatcaaatgtgac
atgtcagctattcagaaagttctctataggcacatgcaaggcaaaggcatcttgctcaca
gatggctcagaaaaagacaagaagggtaaaggaggggcaaagactctgatgaacaccatc
atgcagctgaagaagatctgcaaccacccttatatgttccagcacattgaggagtctttt
gctgagcacttaggctacccaaatggcatcatcaatggtcctgatctgtaccgtgcttct
ggaaaatttgagctactggaccgcattctgcctaagctgcagtccaccaatcacagagtg
ttgctcttctgtcagatgacttccctaatgaccatcatggaggattacttcgcctaccgc
aacttcctctacttacgtctagatggaacaaccaaagctgaagaccgtgctgcactgctg
aaaaagtttaatgatgagggctcacagtattttgtctttctgctgagcacaagagcaggg
ggtctgggcctcaacctgcaggctgctgacactgttgtcatcttcgacagtgactggaac
ccccaccaggatttgcaggctcaggaccgcgctcaccgaatcggacagcagaacgaggtg
cgtgtgttgcgtctctgcaccgtcaacagcgtagaagagaagatcctcgctgctgccaaa
tataaacttaacgttgatcagaaggtcatccaggctggtatgttcgaccagaaatcctct
agtcacgagcgcagggcttttctacaggccatcctggaacacgaggagcagaacgaggaa
gtgctaagactgagcgagagagagagagagctgtcatcggaagaagatgaagttccagat
gatgaaacgttaaatcaaatgattgcccgcaatgaggaggaatttgagcttttcatgcgc
atggacctggatcgacgtcgcgaagatgcgcgtaaccctaagcgtaagcctcgtctgatg
gaggaggacgagctaccggcttggatcatcaaagacgatgctgaagtggagcgactcacc
tgtgaggaagagaaagagaagatgttcccccgcggatcacgccaccgtagggatgtggat
tacagtgatgcgctgaccgagaaacagtggctgagagccattgaagatggcaacctggag
gagatggaagaggagatccgtctgaagaagcgcaagcgcaggagatacttggacaaaggc
agccgacgtgaggacggggacaaggctaaaaagaggaggggacgtcctccggccgaaaag
ctctcccccaaccctcccaaactcaccaaacagatgagcgccatcatcgagacagtcatc
aactacagagacggatcaggccgtcagctcagtgaggtgtttgtacaactgccttccagg
aaagagctcccagagtactacgaactgattaggaagccagtggacttcaagaagataaag
gagagagtgcgtaaccataagtacaggagcttgggcgatttggaaaaagatgtaatgctc
ctctgtcacaatgctcaaacctacaatctagaaggctctcagatctttgaggactccata
gtgctgcagtccgtgtttaggagtgccaggcagaagattgccaaagaggagagtgaggac
gacagcaatgacgacgatgatgaggagtcagaggctgagtctaagtcagtgaaggtgaag
atcaagctgagcaagcgggaggagcgcagccaagaaaggggcaagaagcggccgagccgg
gtcaaagccaagcctgtggtcagtgatgatgacagtgatgaagaacaggaggagaatgag
cagtcagacggcagccgcacagaagatgagtga
DBGET
integrated database retrieval system
