Ignatzschineria rhizosphaerae: MMG00_01855
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Entry
MMG00_01855 CDS
T08009
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ign
Ignatzschineria rhizosphaerae
Pathway
ign03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMG00_01855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ign03019
]
MMG00_01855
Enzymes [BR:
ign01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMG00_01855
Messenger RNA biogenesis [BR:
ign03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMG00_01855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
UNM96633
UniProt:
A0ABY3X9I1
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All DBs
Position
420566..422074
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AA seq
502 aa
AA seq
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MGKPHLTSMKFTDLNLHDSLKESLVDNGYEFCTEIQEKALPVLLKGQDVTGQAQTGTGKT
ATFLLATLNHLMTVPVEEGKKGPYAIIMAPTRELAVQIHEDAKMLGRYTGLKYALLYGGA
AYGTQNEALEADPDIVIGTVGRILDYFKQKKLNLRNVEVFVLDEADRMFDLGFISDIRFL
LRQMPKVEKRQNMLFSATFSQRIFELAYEHMNDAELVKVEAEQVTGSRITQRLYHVSSDE
KLKLLFGLLKKEKAERSIVFVNTKRSADEVFNTLNANGYKAAVLSGDIPQNRREKLLEEF
KNGELSIMVATDVAARGLHIPDVTHVFNYDLPQDVEDYVHRIGRTARAGAEGTAITFACE
EYVYSLMDIQDYIKEEIPVESITEELLITPEVTPPPAERRDNRQRRTRNNPRNNQHRGPE
GAQRGNRRQPRRRQEGEGNENAPVAENVATPNRESEAPEVAQGGENQSQDNQNRRPARRG
VRRNRRPNQNRRRQNSEAPQES
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaccacatttaacttctatgaagtttacagatttaaatttacatgattcactg
aaagagagcttagtcgataatggctatgaattttgtacggaaattcaggagaaagcttta
cctgtgctattaaaggggcaggatgttacggggcaagctcaaacaggaacaggtaagacg
gcgacattcttattagcaacgctcaatcacttaatgacagttcctgtagaagagggaaaa
aaaggcccttatgcgattattatggcgccaacacgtgaacttgcggtgcagattcatgaa
gatgccaaaatgcttgggcgttatacgggattaaaatatgcacttctctacggaggcgct
gcatatggtacgcaaaatgaagcattagaagccgatcctgatatcgttattggaactgtt
ggacgtattttagattactttaagcagaagaaactcaatcttcgtaatgtggaagtattt
gtattagatgaagcagatagaatgtttgatctaggcttcattagtgatattcgcttcctt
ttaagacagatgcctaaagtagaaaaacgtcaaaatatgctgttttcagcaacattttca
cagcgtatttttgagctcgcttatgagcatatgaatgatgctgagcttgttaaagttgaa
gccgagcaagtgacaggttcacgtattacacagcgtttataccatgtctcttcagatgaa
aagttaaagttactctttggtcttttaaagaaagagaaagcagagcgttcaattgtgttt
gtaaatactaaacgctcagcggatgaagtatttaatacgctcaatgcgaatggttataaa
gcggcggttctttcgggagatattccccaaaatcgtcgtgaaaaacttttagaagagttt
aaaaatggtgagctttctattatggtggcaacagatgttgctgcgcgtggtctgcatatt
cctgatgttactcatgtatttaactacgatttaccgcaagatgtggaagattacgttcac
cgaattggtcgtaccgcgcgcgctggtgctgaaggaactgcaattacctttgcttgtgaa
gagtatgtctattcattaatggatatccaagattacatcaaagaagagattcctgttgaa
tcaattacagaagagttattgatcacgcctgaagttacgccgccaccagctgagcgtcga
gataatcgtcaacgtagaacacgcaataacccgcgtaataatcagcaccgaggtccggaa
ggagctcaacgtggtaatcgtcgtcaaccgcgtcgtcgtcaagaaggggaaggcaatgaa
aatgcaccagttgctgaaaatgtcgcaacccccaatagagaaagcgaagcaccagaagta
gcacaagggggcgagaatcaatcacaagataatcaaaatcgccgtccggctcgccgaggc
gttcgtagaaaccgtcgtcctaatcaaaatagacgtcgtcaaaattcagaagcgccgcaa
gaatcataa
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