Ignatzschineria rhizosphaerae: MMG00_01870
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Entry
MMG00_01870 CDS
T08009
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ign
Ignatzschineria rhizosphaerae
Pathway
ign03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMG00_01870 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ign03019
]
MMG00_01870 (recQ)
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_01870 (recQ)
Enzymes [BR:
ign01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMG00_01870 (recQ)
Messenger RNA biogenesis [BR:
ign03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMG00_01870 (recQ)
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MMG00_01870 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
BATS
Motif
Other DBs
NCBI-ProteinID:
UNM96636
LinkDB
All DBs
Position
complement(424303..426102)
Genome browser
AA seq
599 aa
AA seq
DB search
MKAHQALQKYFGYSEFRDGQETLINAILEGKDALGIMPTGGGKSLCYQIPALLLPHITLV
ISPLISLMKDQVDSLSEIGISATFINSTLDEETLRERLIGIRENRFKIIYIAPERLNTYS
IRNLFSAVPISFIAVDEAHCISKWGHDFRPAYGEIVDFVYQLPYRPPIGAYTATATLDVI
DEIKQLLHLQAPIESIISFDRKNLTFEVLKVSDKRQYIVDFIKRFYPKDAGIIYCATRKS
VETLTEFLQKSGFNALSYHGGMLSDDREANQNAFIFDKTQIIVATNAFGMGIDKSNVRFV
IHYNMPQNMEAYYQEAGRAGRDGDPAHCLLMYSPRDISNQKYLIENNEFLVDPERKTILY
QNLQSLIDYCHSEECLRADILRYFSEVPSFESCDNCGNCTNTTPKINITIEAQKILSCVY
RVEQNYGLTTVIQVLRGSKNQQILERNLDKVSTYGIMSNYSDRAIREMIMTLIARGYLYQ
TPDARPILKLKNEAKAILKGEKQLFHRQDLIVHREVSNPESHYRAPFYEPLRELRLELAR
ERDVPAYAIFTDATLREIAELKPKTPGAFLNIKGVGMKKLDQYGAIFIDKIKELEAIMG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcacatcaagcgttgcaaaaatattttggctatagcgaatttcgcgatggtcaa
gagacgctgatcaatgcaatcttagaaggcaaagatgcgcttggcatcatgccaacaggt
ggcggaaaatctctctgctatcaaatcccagcgctactccttccccatatcacacttgta
atctccccactgatctcacttatgaaagatcaggtcgattccctctctgaaattggtatt
tctgcaacctttattaatagtactttagatgaagagacgctacgagagcgcttaatcggc
attcgagaaaaccgttttaagattatctatattgcccccgagcgcctaaatacctattct
attcgtaatctcttctccgcagttcctattagttttattgccgtagatgaggcgcactgt
atctctaaatggggtcatgattttcgccccgcttatggggagattgttgattttgtctat
caacttccttatcgcccacctattggagcttatacagccactgcaacgctcgatgttatt
gatgagatcaaacaactactccatctacaagcaccgatagaatcgattattagctttgat
cgtaagaatcttacctttgaggttcttaaagtatcagataaacgccaatatatcgttgat
tttatcaagcgattttaccccaaagatgccggtattatctactgcgctactcgtaaaagt
gtggagacattaacagagtttctccaaaagtcaggctttaatgcattaagttaccacggg
ggaatgctaagcgatgatcgagaagcgaatcaaaatgcctttatctttgataaaacacaa
attattgtcgcaaccaatgcttttggaatgggaatcgataaatctaatgtccgctttgtc
atccattacaatatgccgcaaaacatggaagcttactaccaagaagcgggacgcgccgga
agagatggggatcctgcacattgccttttaatgtattctccaagagatatctccaatcag
aaatatttaattgaaaataatgaattcttagtggatcctgagcgcaaaacaatcctctat
caaaatctgcaatccctcattgattattgccattcagaagagtgccttcgcgcggatatt
ttgcgttacttctcagaagttccaagctttgaaagctgtgataactgcggaaattgtact
aatacaacgccgaaaattaatattacaattgaagcgcaaaaaatactctcttgtgtctat
cgagtggaacaaaactatgggttaaccaccgttattcaagtattacgaggctctaaaaac
caacaaattttagagcgaaatctcgataaagtttcaacttacggcattatgagtaactac
tctgatcgcgctattcgggagatgattatgacgcttattgctcgtggatatctctaccaa
acgcctgatgctcgccccattttaaaacttaaaaatgaagcaaaagcgattcttaaaggt
gaaaagcaactcttccatcgtcaagacttaattgttcatagagaagtctctaatcctgaa
agccattatcgcgcacctttttatgagccacttcgtgaactacgcttagagcttgcccgt
gaacgagatgtgccggcatatgcaatttttacagatgcaacattaagagagatcgcagag
cttaaacccaaaacgccaggtgcattccttaatatcaaaggcgttggaatgaaaaagctt
gatcaatatggcgctatttttatcgataaaatcaaagaactagaagcaataatgggctaa
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