Ignatzschineria rhizosphaerae: MMG00_03135
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Entry
MMG00_03135 CDS
T08009
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ign
Ignatzschineria rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ign03032
]
MMG00_03135 (topA)
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_03135 (topA)
Enzymes [BR:
ign01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MMG00_03135 (topA)
DNA replication proteins [BR:
ign03032
]
Prokaryotic type
DNA Topoisomerases
MMG00_03135 (topA)
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MMG00_03135 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UNM96864
UniProt:
A0ABY3X1W0
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Position
complement(722890..725397)
Genome browser
AA seq
835 aa
AA seq
DB search
MSKSLVIVESPAKAKTIEKYLGKNFTVLASFGHVRALIRKQGSVDPDDNFSMKYEVIPQN
KKHLAAIEKALKDAENLMLATDPDREGEAISWHILEYLKEKRALVGKKITRVVFNEITKS
AVEHAVANPRQVDMDLVEAQQARTALDYLVGFNLSPLLWKKINPGLSAGRVQSPALRMIV
EREDEINAFISQEYWSIFADMAKEKSTFSGRLTEYKGEKVEQFTFTDEKAATEVQKTLLE
KFGKNIPVYNVEKKQRKRNPAAPFTTSTLQQEASRKLRFSTSRTMRTAQDLYEGINLGSE
TIGLITYMRTDSVTLSNEALEDIRKYIGSKHGAEYLPKSPREYTTKAKNAQEAHEAIRPT
SVFRTPEAVKEHLTSDQFRLYELIWKRAVASQMKSAIMDTTSIDLGEKGLHTFRVTGSTI
AFPGFMSIYLEDVDDEKEDQKEEDRILPEMKEGDQIDLQAINPNQHFTEPPPRYTEASLV
KSLEEFGIGRPSTYASIISTLQNREYVILDNRRFTPTDMGKIVSRFLSAEFTRIVDYEFT
AKMEDDLDEIASGERERVPLLQEFWTPFIAQCDFVEENVTRAEVAQAKVLGEDPKSGKPV
SVRVGRYGPFAQIGDKDDEDKPRFASLLPGQSIDTITFDEAMALFRLPRVLGTAEDGYDI
RANIGRFGPYIQYGTRKFVSLKEDDPYSVTFERAMEIVEAHKAAEAAKFIGSFQDGDVTI
EIINGRFGPYVTDGSKNAKVPKDEDPAKLTLEQCKELLEKAPAKGRRKAAAKKTTTKAAA
KKPAAKKTTTKKATTKTATTKKAATKATTAKKPATKTTTAKKTTAAKKTTTEKDS
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaatcattagttattgttgagtcccccgcaaaagcgaaaaccattgaaaaatat
ttaggaaagaactttacggttcttgcctcctttggtcatgtacgcgctttaattcgtaaa
cagggttctgtcgatcctgatgataacttttcgatgaaatatgaagttattccacagaac
aaaaaacatttagctgctattgagaaagctttaaaagatgctgaaaatcttatgctcgca
acggacccggatagagagggtgaagcgatctcatggcatatcttggaatatttaaaagaa
aaacgggcacttgttggcaaaaaaattacacgcgttgtcttcaacgaaattaccaaaagt
gctgttgaacatgccgttgcaaatccccgacaagtggatatggatttagtagaagcgcag
caagctcgtacggcacttgattatcttgtgggatttaatctctcgccgcttttatggaaa
aagattaacccagggctttcagcaggccgcgtacaatcaccagcacttcgcatgattgtt
gagcgtgaagatgaaatcaatgcgtttatctcccaagaatattggtccatctttgccgat
atggcaaaagagaaatccactttttcaggccgtttaacagaatataaaggcgaaaaagtt
gagcaatttaccttcactgatgagaaagccgctactgaggttcaaaaaaccttactagaa
aaatttgggaaaaacattcctgtttataatgttgaaaagaaacaacgtaaacgtaatcca
gcggcaccctttacgacctcaacactacaacaagaagcttctagaaagctacgttttagc
acctctagaacaatgcgtaccgcacaagatctctatgaagggattaaccttggtagtgaa
accattggtcttattacctatatgcgtacagattctgtcactctttcaaatgaagcgctt
gaagatatccgtaaatatattggtagcaaacatggggctgaatatttaccaaaatcccca
cgcgaatacacaacaaaagcaaaaaatgcacaagaagcgcatgaagcgattcgcccaaca
tctgtctttagaacaccagaagctgtgaaagagcatctgacatcggatcaatttagactt
tatgagcttatttggaaacgagcagtcgcttcacaaatgaaatcagccattatggatacc
acctcgattgatcttggtgaaaaaggccttcatacctttagagtaactggctcaacgatt
gcatttcctggatttatgagcatctaccttgaagatgttgatgatgaaaaagaggatcaa
aaagaggaagatcgtattcttcctgagatgaaagaaggtgatcagatcgaccttcaagct
atcaatcctaaccagcattttacagagccgccacctcgctatacggaagcatcacttgta
aaatcattagaagagtttggtattggtcgtccatcaacttacgcctcaattatctcgact
ctacaaaatcgtgaatatgtgattctcgataatcgccgcttcacgcctactgatatgggt
aaaattgtctctcgcttcttaagcgccgagtttacccggattgtcgattatgaatttacg
gcaaaaatggaagatgaccttgatgagatcgcaagcggcgagcgtgaacgcgtaccacta
cttcaagagttttggacaccttttattgcccaatgtgactttgttgaagagaatgttacc
cgcgcagaagtcgcgcaagctaaagtcttaggagaggatcctaagagcggtaagcctgtt
tctgttcgtgttggtcgttatggaccttttgcacaaattggggataaagatgatgaagat
aagccgcgctttgcatctcttcttccgggacaaagtattgataccatcacctttgatgaa
gcgatggcgctctttagattgcctcgagttttaggaactgcggaagatggttatgatatt
cgtgcaaatatcggacgctttggtccttatatccaatatggcactcgtaaatttgtttca
cttaaagaagatgacccttatagcgttacctttgagcgagcgatggagattgtcgaagca
cataaagcagcagaagctgcgaaatttatcggctccttccaagatggtgatgtcactatt
gagatcatcaatggccgctttggaccttatgtcactgatggtagtaaaaacgctaaagtc
cccaaagatgaagatcctgcaaaattaacgcttgaacagtgtaaagagcttttagaaaaa
gcgccggcaaaaggtcgtcgtaaagcagctgctaaaaagacgaccacaaaagccgctgca
aaaaagcctgcggcgaagaaaacgaccactaaaaaggcgactactaaaactgcaacgact
aagaaggctgctacaaaagccacaacagcgaagaagcctgccacaaaaacaacaacggct
aaaaaaacaaccgccgcaaagaagacaacaactgaaaaagattcgtaa
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