Ignatzschineria rhizosphaerae: MMG00_05310
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Entry
MMG00_05310 CDS
T08009
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ign
Ignatzschineria rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ign03016
]
MMG00_05310
Enzymes [BR:
ign01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MMG00_05310
Transfer RNA biogenesis [BR:
ign03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MMG00_05310
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UNM97272
LinkDB
All DBs
Position
1243606..1244499
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AA seq
297 aa
AA seq
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MKDLYIDTQEALDEWCNTQLESIELLALDTEFMRVKTYFPKLCLIQLATENEAVCIDPLA
LDDFSSLKALLQAPHITKIIHSASQDLEAIVHAFDILPMPVFDTQIAAQITQSVKIGMSY
HDLVLHYCEVDLTRDQTRTQWDLRPLTSEQLKYAYDDVHYLIPAYKKLIQEIEANNQHGL
LKSNLAPLTEKERYEPDPEGAWKKVKGYKRIRGSSKQLLRALAKMRELMAMRQNLPKRWI
IKDEILIHLAERYAKKTPKLHEDYAIATYNEHIQNQIYKTIENFWDNSTHDLIEEEK
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctttatatcgatacgcaggaagccttagatgagtggtgcaatactcaatta
gagagtattgagctccttgctttagatactgaatttatgcgagtaaagacttatttccca
aagctatgtctgatccagctcgcaactgaaaacgaggccgtttgcatcgatccattagca
cttgatgacttttctagcttaaaagcattactccaagcgcctcacattacaaagattatt
cactctgcaagccaagatctagaagcgattgtgcatgcttttgatatcttgccaatgccg
gtatttgatacccaaattgcggcgcaaattacccaaagcgtcaaaattgggatgagctat
cacgatcttgtccttcactactgcgaagtggatttaacacgtgatcaaacgcgtacccaa
tgggatttaagaccgctcacgagcgaacagcttaaatatgcctatgatgatgtccattac
ctcattcctgcttataaaaagctgattcaagagattgaagctaataatcaacatgggctt
ttaaagtcaaatctagcaccgctcacagagaaagagcgctatgagccagatccggaaggc
gcttggaaaaaggttaaaggttataaaagaatacgaggttcatcaaaacagcttctacgt
gctttagcgaaaatgcgggaactgatggcgatgcgccaaaacctaccaaaacgttggatt
attaaagatgagatcttaattcacctagctgagcgctatgcgaaaaaaacaccaaaactc
catgaggattacgccattgccacttataatgagcatatccaaaatcagatttataaaacg
attgagaacttctgggacaatagtactcacgatctaatagaagaagaaaaatag
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