Ignatzschineria rhizosphaerae: MMG00_06450
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Entry
MMG00_06450 CDS
T08009
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ign
Ignatzschineria rhizosphaerae
Pathway
ign03030
DNA replication
ign03430
Mismatch repair
ign03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMG00_06450 (dnaE)
03430 Mismatch repair
MMG00_06450 (dnaE)
03440 Homologous recombination
MMG00_06450 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ign03032
]
MMG00_06450 (dnaE)
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_06450 (dnaE)
Enzymes [BR:
ign01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MMG00_06450 (dnaE)
DNA replication proteins [BR:
ign03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MMG00_06450 (dnaE)
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MMG00_06450 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UNM97477
LinkDB
All DBs
Position
1494809..1498297
Genome browser
AA seq
1162 aa
AA seq
DB search
MTFTHFNLHTEFSLVDGIIRIKPLFAKLKEMGMNAIALTDLGNEFGAIKFYETAIKSGIK
PIFGADCLVINEEEEVGRITLIAQNYAGYLNLSELLSYGYRYHQVRGIPYITHEKLLEYS
EGLIVILSKESHFGQTLLSQGSDKAIEVLRTFYTPFLEDRLYIGIKRVGQENDERFIQES
LPIAELLNLPLIAHNDVRFTEEAEFEAHEVRTCIQSGHTMLDPNRPKNYSPQQYLRSPQE
MVELFKDLPEAIENSKELAKRCTVTLTLHKPQLPAFPIPEGMTIEEFFKSESYKGLEDRI
GKRTPENDHPTYWDRLETELNVINNMGFPGYFLIVADFIQWAKDNGIPVGPGRGSGAGSL
VAWALKITDLDPLPYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYVANTYGREAVSQ
IATHGTMAAKAVIRDVGRALGHPYGFVDRIAKLIPMDLGITLEKAMMQEPELHDLYHQDE
EVKILMDYALQLEGLSKSVGRHAGGVVIAPTKLTDFSPLYCEEGSSALVTQYDKDDIEAA
GLVKFDFLGLRTLTIIDWALKNIAYNRDLTIDIQSLPLDDKPTFDLLKACQTTSVFQLES
RGMKDLLRRMQPDNFEDIVALVALFRPGPLESGMVEDFINRKHGREEVIYPFDELEPVLK
PTYGVIVYQEQVMQISQIIGNYSLGGADLLRRAMGKKLPEEMEKQRGLFMAGAETLGFDS
EKAGNLFDLMEKFAGYGFNKSHSAAYALLSYQTAYLKHHYPPEFMAAVLSADLDHTDKII
IIIDEVKEMKIPIIRPSINESFYKFTVNRDGAIIYGLGALKGYGQAAAMQLIDEREANGP
YLDLFDFCRRIDLSKTSKRAIDILIRAGALDCLDDSIQTVAERAHYRAKLLATMTEAIRL
ADQHHKNETSGQGDIFGLFDDTPQDEPQYTLQDSLPMTENELLHAEKAMLGFFFTAHPVD
QYRKEIESVVTTSLTTLKEMPEPQYHSRGHDDSVLIGGLVTSFYTRISKAGNKMYFVVID
DGRSRAELRLFEDTIEAFGQQIETDTILFIRGGYNWDSFNNSMTLRVSSLHSLEEIRETH
AKYIYLENHQSITKKIVQDIFNKMKKHQSSEKGLQIIFKYNGEKSSGVMQMENLRIIPDE
VLLTALKQQYHDYIQIGVGYNQ
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacttttacacactttaatcttcatactgaattctcccttgtggatgggattattcgc
attaagcctctctttgctaaactaaaagagatgggaatgaacgctattgctttaacagat
ttaggtaatgaatttggcgcaattaaattttacgagacagcaataaaatcaggcatcaag
ccaatatttggtgccgactgcttagtgattaatgaagaggaagaagttggcagaattact
ttaattgcccaaaattatgcagggtaccttaatctttctgagctcttaagctatggttat
cgctaccatcaggttcgcggtattccttatattacacatgagaaacttctagaatactcc
gaaggtttaatagtcatactctccaaagagagtcattttgggcaaacactccttagccaa
ggaagtgataaggctatagaggttctacgaaccttttacacaccttttctagaagatagg
ctctatattggtatcaaaagagtgggccaagaaaatgatgagcgttttattcaagagagc
ctcccaattgcagaattactcaatttaccgcttattgcgcataatgatgttcgctttaca
gaagaagcagagtttgaagcgcatgaggtgagaacctgcattcaatctgggcatacaatg
cttgacccaaatcgccctaaaaactactctccacaacaatatcttcgctcgccacaagag
atggtagagcttttcaaagatcttcctgaagcaattgaaaatagtaaagagctagcaaag
cgttgtaccgtcacattaacgctccataaaccacaattgccggccttcccaattcctgaa
ggcatgacgattgaagaattctttaaatcagaatcttataaagggcttgaagatagaatc
gggaagcgaacccccgaaaatgatcatcccacctattgggatcgccttgaaacagagctt
aatgttattaataacatgggctttcccggctacttcctaattgttgcggactttattcaa
tgggcaaaagataatgggattccggtaggacctggccgaggttctggtgctggctctctt
gtggcttgggcacttaaaatcaccgatctagatccactaccttacgatctactctttgaa
cgcttcttaaaccctgaacgtgtatcaatgccggacttcgatgttgacttctgcatggaa
ggacgagatcgcgttattgaatatgttgccaatacttacgggcgtgaagcagtatcacaa
attgcaacccatggtaccatggcggcaaaagcggttattcgagatgtaggccgtgcgctt
ggtcatccttatggatttgtcgatcgcattgcaaaactcatccccatggatttaggaatc
acgctggaaaaagcgatgatgcaagaacctgagctccatgacctttatcatcaagatgaa
gaggtcaaaatcctcatggattatgccctacagcttgaaggactctctaaatcagtcgga
cggcatgccggcggcgttgtcattgccccaacaaaactgacagatttttccccgctttat
tgtgaggaaggctctagcgcgcttgttacccaatatgataaagacgatattgaagccgct
ggccttgtaaagtttgacttcttaggcttaagaacactcacgatcattgattgggcactt
aaaaatatcgcttataatcgtgatttaacgatcgatattcagagcttaccacttgatgat
aagcctacctttgatcttctaaaagcctgccaaacaacttctgttttccagctagaatca
cgcgggatgaaagatcttcttcgccgcatgcagcctgataactttgaagatattgtcgcg
cttgtggcactctttagacctgggccgcttgagtctggcatggttgaggactttatcaac
cgtaaacacggacgtgaagaagtgatctacccatttgatgagctagaacctgttcttaaa
cccacttatggggttattgtttatcaagaacaagttatgcagatctcccagatcattggg
aattatagccttggtggcgctgacttactgcgccgagcaatgggtaaaaagctccccgaa
gagatggaaaagcagcgtggcctctttatggcaggagctgaaacattaggctttgactct
gaaaaagcaggtaacctttttgaccttatggagaagtttgcaggctatggatttaacaaa
tctcactcggcagcttatgcccttctctcttatcaaaccgcctatttaaagcatcattat
ccaccagaatttatggctgcagtactctctgctgatcttgatcacactgataaaattatc
attatcattgatgaagtcaaagagatgaagattcctattattcgcccgagtatcaatgaa
tctttctataagtttactgttaaccgagatggcgcgattatctatggcttaggagcgcta
aaaggttatgggcaagcagcggcaatgcagcttattgatgagcgagaggcaaatggtcct
tatcttgacctctttgatttctgccgcagaattgatttatctaaaacctcaaaacgtgcg
attgatatcctcattcgtgccggcgctttagactgcttagatgatagcatacaaacggtt
gcagagcgtgctcattatcgtgcaaaacttcttgcgacaatgacagaagccattcgttta
gcagatcagcaccataaaaatgaaacttctggtcaaggcgatatttttggtctttttgat
gatacaccgcaagatgagccgcaatataccttacaagactcactgccaatgacagaaaat
gagttactgcatgcagaaaaagcgatgcttggcttcttctttacggcgcaccctgtcgat
cagtatcgtaaagagattgaatcagttgtcacaacttctctgaccactttaaaagagatg
ccagagcctcaatatcattcacgaggacatgatgatagcgttttaattggtggcttagtc
acctccttttatactcgcatcagtaaagctggtaacaaaatgtactttgttgttattgat
gatggcagatcacgcgcagaacttcgtctttttgaagatacgatagaagcctttggtcag
cagattgaaacagatacaattctctttatccgtggtggctataactgggattcctttaat
aatagtatgaccttgcgtgttagctcacttcattcacttgaagagattcgagaaactcat
gcaaaatatatctaccttgaaaaccatcaatctattaccaaaaagatagtgcaagatatc
ttcaataagatgaaaaagcaccaaagctctgagaaaggactacagattatctttaaatat
aatggagagaaaagctctggcgtaatgcagatggaaaatcttcgtattattcctgatgaa
gtgctgttaactgccttaaaacagcaatatcatgattatattcaaatcggtgtcggatat
aatcaataa
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