Ignatzschineria rhizosphaerae: MMG00_07270
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Entry
MMG00_07270 CDS
T08009
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ign
Ignatzschineria rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MMG00_07270 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ign03021
]
MMG00_07270 (rpoD)
Transcription machinery [BR:
ign03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MMG00_07270 (rpoD)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r2
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
UNM95040
UniProt:
A0ABY3X2Q7
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All DBs
Position
complement(1675710..1677530)
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AA seq
606 aa
AA seq
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MSNQSDQKKQDQLKKEQIKKLIAYGKEQGYLTYAEVNDHLPKGMVDPEQIESIIAMIEDM
GISVHEEAPDEDTLMLSESLDSDDAVEEAAEVLANIDDEEIGRTTDPVRMYMREMGTVDL
LTREEEKQIAIRIEEGLHSSLNSLALYVPATYHLIDSYHAAVKEEGRLTDVVLGFIDPSF
YLEDEEKEDEEVEVDDSANGPDPEILATKITELQAIVDKLNAIKEKEGATSKSDKIKEVR
AGLREKFMEFQLAPKLQIEMYDKLRETIDRIRPLERKIMHICVAKAKMPRTEFLKVFPRN
EANKEVFKDDVFNRKAKYVEPLKEFEKHIYEYQDRLAKIEGETDLTIYEIKEINRQISIG
EAQARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQLLQEFGREATPEEIAEAMG
ETEERVRRVLKIAREPVSMETPVGDDEDSSLGDFIEDVYAVSPMESATDEGLNDATREVL
DTLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPNRSESLK
SFLDVD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcagtcagatcaaaaaaaacaagatcagcttaaaaaagaacaaattaaaaag
cttatcgcttatggtaaagagcaaggatatcttacctatgctgaggtaaatgaccatctt
ccaaaaggaatggttgatccagagcaaatcgaaagtatcattgcgatgattgaagatatg
ggaatctcggtccatgaagaggcgcctgatgaagatactttaatgttaagcgagtcttta
gatagtgatgatgctgttgaagaagcggctgaagtattagcgaatatcgatgatgaagag
atcggacgcacaacagaccctgttcgtatgtatatgcgtgagatgggaactgttgatctt
ttaacgcgtgaagaagagaagcagatcgcaattagaattgaggaaggtcttcattcttca
ttaaattcattagctctctatgttcctgcaacttatcatttaatcgattcttaccatgca
gcagtaaaagaggaaggtcgattaacagatgttgtacttggctttattgatccaagtttc
tatcttgaagatgaagagaaggaagatgaggaagttgaggttgatgacagcgctaatggg
cctgatccagaaattttagcaaccaaaattactgagttacaagcgattgtagataagctt
aatgccatcaaagagaaagagggcgcaaccagtaaatcagataaaatcaaggaagttcgt
gccggtcttcgtgagaagttcatggaattccaattagcgccaaaactgcaaattgagatg
tatgataagttgcgcgagacgattgatcgtattcgtccacttgagcgtaaaattatgcat
atctgtgtggctaaagctaaaatgccgcgtacagaattcttaaaagttttcccaagaaat
gaagcgaataaagaagtctttaaagatgatgttttcaatcgtaaagcaaaatatgtagaa
cctcttaaagagtttgaaaaacatatttatgagtatcaagatcgcttagcaaaaattgaa
ggggaaactgatttaacgatttatgagattaaagagattaatcgtcaaatctcaattggt
gaggcgcaagcgcgccgtgcaaaacgtgagatgattgaggcgaacttaagacttgtaatc
tctattgccaaaaaatataccaatcgtggattgcaattcttggatctgatccaagaagga
aatatcggtttgatgaaagcggttgataaatttgaatatcgccgtggttataagttctca
acttatgcaacatggtggattcgtcaggctatcactcgttctattgcagatcaggcgcgt
acaattcgtatccctgttcatatgattgagacgattaataagttaaatcgtatttctcgt
caattgttgcaagagtttggacgtgaagcaacaccggaagagattgctgaagcgatgggt
gaaacagaagagcgagtacgtcgcgtgctcaagattgctcgtgaacctgtctctatggag
acaccggtaggggatgatgaggactcaagtttaggcgactttatcgaagacgtctatgca
gtttctcctatggagtcagcaacagatgaaggtcttaacgatgcaactcgtgaagtgtta
gatacattaacggcaagagaggcaaaagttcttcgtatgcgttttggtattgatatgaat
accgatcacacattagaagaggttggtaagcagtttgatgttacgcgtgagcgtattcgt
cagattgaggcgaaagcattacgtaagcttcgtcatcctaatcgttcagagagcttaaaa
agcttcttagatgttgattaa
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