Ignatzschineria rhizosphaerae: MMG00_08215
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Entry
MMG00_08215 CDS
T08009
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ign
Ignatzschineria rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ign03032
]
MMG00_08215
03036 Chromosome and associated proteins [BR:
ign03036
]
MMG00_08215
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_08215
DNA replication proteins [BR:
ign03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
MMG00_08215
Chromosome and associated proteins [BR:
ign03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
MMG00_08215
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
MMG00_08215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF2267
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
UNM95213
LinkDB
All DBs
Position
complement(1876118..1876396)
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AA seq
92 aa
AA seq
DB search
MNKTELIAAVAEKTEMTKVASAKAVEAVMETITEALAKGDSVTLIGFGTFTVRDRAARVG
RDPRNPEKTIQIKASRVPAFRAGKGLRESVNK
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaactgaattaattgctgcagtagcagaaaaaacggaaatgacgaaagtagct
tctgcgaaagcagttgaagcagtgatggaaaccattactgaagcgcttgctaaaggcgat
agcgtaactttaatcggtttcggtacattcacagtacgtgaccgtgctgcacgtgtaggt
cgtgacccacgtaatcctgaaaaaacaatccagatcaaagcatcacgtgtaccagcgttc
agagcgggtaaaggtttacgtgaatctgtgaacaaataa
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