Ignatzschineria rhizosphaerae: MMG00_08560
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Entry
MMG00_08560 CDS
T08009
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ign
Ignatzschineria rhizosphaerae
Pathway
ign03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMG00_08560 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ign03021
]
MMG00_08560 (rpoA)
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_08560 (rpoA)
Enzymes [BR:
ign01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMG00_08560 (rpoA)
Transcription machinery [BR:
ign03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMG00_08560 (rpoA)
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMG00_08560 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UNM97602
LinkDB
All DBs
Position
complement(1958049..1959059)
Genome browser
AA seq
336 aa
AA seq
DB search
MHMALNELLTPRIVEIKTDENHFSEIALEPLERGFAHTLGNALRRILLSSMPGAAITECE
IEGVSKEYSAIPGMHEDVIDLLQNLKGIAIILHDAPEAYITLEKKGKGAVTAGDLEIPHN
VEIVNPEHVIANLTSSGSLKMRLKVESGRGYSTAANRENEAGDSSSIALGLFKLDTTFSP
VNRVSYRVETARVEQRTDLDKLVIALETNGTLDPEQAIRNAATILHEQLSVFVDLKPMPE
EEPVEEEPEFEIDPTLLRPVDDLELTVRSANCLKAESVYYIGDLIQKTETELLKTPNLGK
KSLTEIKDVLAQYGLSLGMTLDNWPPPNLDTSKPPA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atacatatggctttaaatgagttattaactccacgtatagtggagatcaaaaccgacgaa
aaccacttctctgaaatagcgttagagcctcttgagaggggctttgcgcacacgttaggg
aatgcccttcgtcgtattctgctatcttcgatgccaggtgcagcgattacagagtgtgaa
attgaaggtgtttctaaagagtattctgcaattccaggaatgcatgaagatgttatcgat
cttctgcaaaaccttaaaggcattgcgattattcttcatgatgcacctgaggcatacatt
accttagaaaagaaaggtaagggtgctgtcacagcaggagatctcgaaattcctcataat
gtggaaatcgtgaatcctgagcatgtaattgcaaaccttacttcaagtggatcattaaaa
atgcgcttgaaagtagagagtggtcgcgggtacagcacagctgcaaatcgtgaaaacgaa
gcaggggatagctcttctatcgcactcggtttattcaagttagacacgacatttagtcct
gtcaatcgcgtaagctaccgtgttgaaacagcacgtgttgaacaacgtactgacttagat
aaactcgtaattgcgttagaaactaacggaactttagatcctgagcaagcaattcgcaat
gctgcgacaattcttcatgagcaattaagcgtctttgtagaccttaaaccaatgcctgaa
gaggagcctgttgaggaagaaccagagttcgaaattgatcctacgctgttaagacctgtt
gatgatttagagttaactgttcgatctgcaaactgtttgaaagcagagagtgtgtattac
atcggtgatctgattcagaaaacagaaacagagctacttaaaacacctaatcttggtaaa
aaatcattaacagagattaaagatgtgttggcgcaatacggattatcattaggcatgacg
ctagacaactggccgccacctaatttagatacatcaaagccaccagcataa
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