Ignatzschineria rhizosphaerae: MMG00_11690
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Entry
MMG00_11690 CDS
T08009
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ign
Ignatzschineria rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ign03009
]
MMG00_11690 (rlmD)
Enzymes [BR:
ign01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MMG00_11690 (rlmD)
Ribosome biogenesis [BR:
ign03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MMG00_11690 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_15
PCMT
MTS
Cons_hypoth95
RrnaAD
Methyltr_RsmB-F
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
FtsJ
Methyltransf_23
Methyltransf_4
DNA_methylase
DOT1
N6_N4_Mtase
CMAS
Motif
Other DBs
NCBI-ProteinID:
UNM95852
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All DBs
Position
2589909..2591267
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AA seq
452 aa
AA seq
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MSRGPRRGRGRRNRVPSEPITVMIRDLAHDGRGVAKVDEKVIFVDGALPNEEVVANYTKV
KKEYDEAQATEVLVASPDRVEPFCDVYGTCGGCRLQHLDADRQIDFKSEQLKTNLARQAG
LTEYEHLPNLRGESQHYRFKARLGVKHVPAKERVLVGFRERLTPYIVDMHRCPILEEKID
SLIDPLSEMIGKLSIASKLPQIEVAVGDNSHALSFRVLEEPTAEDLEILKAFEIEHDLIV
YLQPGNESTTTALSERGASDQALHYGLLDQLTLYFKPYHFTQVNPAMNNKMVKQALDLLD
LQGDEKVLDLFCGLGNFTLALATKAGSVIGVEGDKSLTDWAGRNAEFNNIKNVEFHCADL
TQDQKDAPWMNQKYDAILIDPPRSGAIEMMPYLGALAPKKILYVSCHPATLARDLAVLTK
EYPYELISAGVMDMFPHTAHVESMALLVRKDA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagaggacctagacgaggtagaggaagacgtaatcgtgttccttctgaacctatt
acagtaatgattcgtgatttagcgcatgatggtcgcggcgttgcgaaggttgatgagaaa
gtaatttttgtagatggtgcgcttcctaatgaagaagttgtggcaaattatacaaaggtt
aaaaaagagtatgatgaagcacaagcaacagaggttttagttgcctcacctgatcgtgtt
gaaccattttgtgatgtatatggcacatgcggtggatgccgtttacagcatttagatgca
gatcgtcagattgattttaagtcagaacaacttaaaacaaacctcgcacgccaagcaggt
ttaacagagtatgagcatctgccaaatcttcgtggagaatcgcaacactatcgctttaaa
gcacgtttaggagtgaagcatgtacctgcaaaagagcgagtacttgttggctttagagag
cgtttaacgccttatattgtcgatatgcatcgttgcccgattttagaagagaagatcgat
tctttgattgaccctctttctgaaatgattggaaagctatcgattgcttcaaaactccca
cagatcgaagtggcggtaggggataactctcatgcattgagttttcgtgtattagaggaa
cccacagcagaagatttagaaattttaaaagcctttgaaatagaacatgatttaatcgtt
tatttacagccaggtaatgaatcgacaacaaccgcattatctgagcgcggcgcatctgat
caagcattacactatggtttgttagatcaattaacgctctactttaagccttaccatttc
acgcaggtcaatcctgcgatgaataataagatggtgaagcaagcgctcgatcttttagat
cttcaaggtgatgagaaagttctcgatcttttttgtggtcttggtaactttaccttagca
cttgcaactaaagcaggtagtgtgattggcgtcgagggggataaaagtttaacggattgg
gcaggacgcaatgctgaatttaataatattaaaaatgttgaatttcactgcgcggattta
acgcaagatcaaaaagatgcgccatggatgaatcaaaaatatgatgcaattttaattgat
cccccaagatcgggagctattgagatgatgccatatttaggggctttagcacctaagaag
attctctatgtatcatgtcatccggcaacattagcaagggatttagcggttttaacgaaa
gagtatccttatgaattgatctcagcgggtgtgatggatatgttcccacatacggcgcat
gttgaatcaatggcacttttagttcgtaaagacgcataa
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