Ignatzschineria rhizosphaerae: MMG00_12470
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Entry
MMG00_12470 CDS
T08009
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ign
Ignatzschineria rhizosphaerae
Pathway
ign03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
MMG00_12470 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_12470 (sbcB)
Enzymes [BR:
ign01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
MMG00_12470 (sbcB)
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
MMG00_12470 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MMG00_12470 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MMG00_12470 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
RNase_T
ExoI_C
Motif
Other DBs
NCBI-ProteinID:
UNM95998
UniProt:
A0ABY3WZE8
LinkDB
All DBs
Position
complement(2738069..2739481)
Genome browser
AA seq
470 aa
AA seq
DB search
MNSTFFFYDLETFGLNPKEDRIAQFAGIRTDANFNIVGDPINIYCQPPKDYIPDPESILI
TGITPQEALEKGVPEAEFAARIHEEFSTPNTCILGYNSIRFDDEMIRYLFYRNFLDPYAH
HWQNGNSRWDLLDVVRATHAFRPEGIHWPSDEDGIVNLKLENLAKVNQLEHEKAHDALSD
VYATIAMAKLIQQKQPKLFEYYFKHRRARDLNNLIDLQNLTPLLHISGMFGQARNNLSMI
MPMLFNPHNKNELISIDLMGDISGILTLNASKIREKMYTPTADLPEGEARIPLKGIHLNK
CPILATTKLLPTMATHTIDEAHCRKNFELLSSHKEAVLSKIFEIYQTPRNYESDPHNEPV
ESLLYQGFFERSDRQQMDLIPKMNGEELLNYDFYFHDPRVLPLLFIYRARNYFETLFEDE
KEDWKRYLSMKREYYKHKYQPKYETLLKSAIEAQDSNKISLLESIKSEYL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgaccttctttttctatgaccttgaaacttttggtctcaatccaaaagaagat
cgcattgcgcaatttgctggtattcgaaccgatgctaactttaatattgtaggagaccct
atcaatatttattgccagccgcctaaagactatattcctgatcctgaatcaatccttatt
accggaataacaccgcaagaggctttagaaaaaggggtgcctgaagcagaatttgcagca
agaattcatgaagaattctctaccccaaatacctgcatcttgggatataacagcattcgt
tttgatgatgaaatgattcgctacctcttttatcgtaactttttagacccttatgcccat
cattggcaaaatggtaactctcgctgggatttactagatgtcgtcagagcaacgcatgcc
tttcgccctgaaggtattcattggccaagtgatgaagatggaattgtgaacctcaagctt
gagaatctcgctaaagtcaatcaactcgagcatgaaaaagcccatgacgccctaagtgat
gtgtacgccacaattgctatggcgaagctaattcaacaaaaacagcctaaactctttgag
tactactttaaacaccgccgagcaagagatcttaataaccttattgacctccaaaactta
acccctttgctacatatttccggcatgtttggacaagcgcgcaataacctctccatgatt
atgccaatgctctttaatcctcataataaaaatgagctcattagcattgacttaatggga
gatatctcaggcatactcacattaaacgcatccaaaattcgagaaaaaatgtatacccca
acagcggatctccctgaaggggaggcgaggatcccgctaaaaggcattcaccttaataaa
tgccctattttagcaaccacaaaattattacccacaatggcaacccatactattgacgaa
gcacattgtcgtaaaaactttgaattactcagcagccataaggaagccgttctctcaaaa
atctttgaaatataccaaacacctagaaactacgagtcagatccccataatgaaccggtg
gaatcacttctttatcaaggttttttcgaacgtagtgatcgccagcaaatggatcttatt
cctaaaatgaatggtgaggaactcttaaattatgatttttactttcatgacccaagagtg
ctaccgctactctttatttatcgtgcacgcaattatttcgagacgctttttgaagatgaa
aaagaggattggaaacgatatctctcgatgaaacgagaatattataaacacaaatatcag
ccaaaatatgaaacactcctaaagagtgcgattgaggctcaagattctaataaaattagc
ctattagaatccattaaaagtgagtatctgtga
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