Ignatzschineria rhizosphaerae: MMG00_13800
Help
Entry
MMG00_13800 CDS
T08009
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ign
Ignatzschineria rhizosphaerae
Pathway
ign03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ign00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMG00_13800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ign03021
]
MMG00_13800 (rpoC)
03400 DNA repair and recombination proteins [BR:
ign03400
]
MMG00_13800 (rpoC)
Enzymes [BR:
ign01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMG00_13800 (rpoC)
Transcription machinery [BR:
ign03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMG00_13800 (rpoC)
DNA repair and recombination proteins [BR:
ign03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMG00_13800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF2267
Motif
Other DBs
NCBI-ProteinID:
UNM96246
LinkDB
All DBs
Position
3001241..3005350
Genome browser
AA seq
1369 aa
AA seq
DB search
MNLLNLFKNEDKGGFDAIKIGLASPEKILSWSYGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCEKCGVEVTLSNVRRERMGHIKLASPVAHIWYLKSLPS
RIGLLLDMTLRDIEKILYFESFVVIEPGLTPFEHGQVLTDEEFLDAIEEYGDEFDARMGA
EAVLELLKAIDLEEEASTLREELQETRSETKFKRLSNRLKLVESFIASGNDPAWMILTNL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLQRLLELEAPDIIVRNEKRMLQES
VDSLLDNGRRGRAISGANKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLR
LHQCGLPKQMALELFKPFIFSQLIQRGIATTIKAAKRMVEREVPEVWDILEHVITEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIESQLEARA
LMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRERLNAKGEGRIFTDTAEVHRAYASKEL
DVHAKIQVRLPITMFEDAEEGEVYRRVESTVGRILLTDLLPEGLPFSLIDKVLSKREISN
LINSCYRRLGLKDTVIFADKLMYTGFYYAMRSGSSVGYEDMVIPPQKQEIIDRAEAEVKE
VQMQYSQGLVTNGERYNKVIDIWSRTNEEVAKTMMSNLGKDEVFDEKTGKNVEQTSFNSI
FMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFVSTHGARKG
LADTALKTANSGYLTRRLVDVAQDLVIVNEDCGTKDGLLMTPIVEGGDIVEPLRDRVLGL
VVAEDVYVPGTEEVLFEAGTLLDEAAVELLDEKGVDELIARSAITCENRHGLCAKCYGRD
LGRGHLVNPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASGSAAVSNVQVKTKGTLKLVR
MKTVRNKDNHLVSISRSGELIIMDEFGRNRERYKVPYGATIVVDEGGSVEIGDIVATWDP
HTIPVIVEVSGHIKFVDFEENINVQKQTDDITGLSNLIVLDSKQRNTGGKRPSICVVDEA
GNELNIPGTDVTAMYTLPVGAILNLNDGDAVSIGDPLARIPQESSKTRDITGGLPRVADL
FEARRPKEAAILAEKTGIVSFGRETMSKQRLIITDSDGVAHEELIPKWRHVNVFEGETVE
KGEIIVDGELSAHDILRLLGVKELAEYLVKEIQDVYRLQGVKISDKHIEVIIRQMLRKVE
ILEANDSNFIKGEQAEYVALLEENERVVAEGGVPATYQPVLLGITKASLATDSFISAASF
QETTRVLTDASIRGLRDHLRGLKENVIVGRLIPAGTGLIYHEERRKAGN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaacttattaaatttatttaagaatgaagataaaggtggttttgatgcaatcaagatt
ggtcttgcatcacctgaaaaaattcttagttggtcatatggcgaagttaaaaagccagag
actatcaactatcgtacctttaaaccagagcgtgatggacttttctgtgcaaagatcttc
ggaccggtaaaagattatgagtgcttatgtggtaaatataagcgccttaagcaccgtggt
gtggtgtgtgagaaatgtggcgttgaagtcacactttcaaatgtacgtcgtgagcgtatg
ggacacatcaagttagcatcacctgttgctcatatttggtatttaaaatcactcccaagt
cgtatcggtttattacttgatatgacccttcgtgatatcgaaaaaattctttactttgaa
tcatttgtggtaattgagccaggtttaacgccgtttgaacatggtcaagtattaacagat
gaagagttccttgatgcaatcgaagagtacggcgatgaatttgatgcccgtatgggtgca
gaagctgtattagagcttcttaaagcgattgatcttgaagaagaagcgtcaacacttcgt
gaagaacttcaagaaacgcgttcagagacgaaatttaaacgtctttcaaaccgtttaaaa
ctcgttgaatcatttatcgcatcaggtaatgatcctgcatggatgatcttaacgaactta
ccagttcttccaccagatttacgaccattagttccacttgatggtggtcgttttgcgaca
tctgatcttaatgatctttatcgccgtgttattaaccgtaataaccgtttacaacgacta
ttagaacttgaagcgccggatattattgtccgtaacgaaaaacgtatgcttcaagagtct
gtagactcattattggataatggtcgtcgtggtcgtgcgatttctggagcgaataagcgt
ccgcttaaatcacttgcggatatgatcaaaggtaaacaaggtcgtttccgtcaaaacctt
cttggtaaacgtgttgactattcaggtcgttctgtaatcgttgttggaccgacacttcgt
cttcatcagtgtggtttaccaaaacagatggcgcttgagcttttcaaaccatttatcttc
tctcaattgatccaacgtggtattgctacaacgatcaaagcagcgaagcgtatggttgag
cgtgaagttccagaagtttgggatattcttgagcatgtgatcactgagcacccagttctt
ttgaaccgtgcaccaacccttcacagacttggtatccaagcgtttgaacctgtattaatc
gaaggtaaagcaattcagcttcacccactcgtttgtaccgcatttaacgccgactttgac
ggtgaccaaatggcggttcacgtaccactttcaattgaatcacaattagaagcacgtgcg
ctcatgatgtcttcaaacaatattctctcaccagcaaacggtgagccgattattgttcca
tcacaagacgttgtattaggtctttactacatgactcgtgagcgtttaaatgcaaaaggt
gaaggtcgtatctttacagatactgctgaagttcatcgtgcatacgcatcaaaagagtta
gacgttcatgcaaaaatccaagttcgtcttccgattacaatgtttgaagatgcagaagag
ggtgaggtctaccgccgcgttgaatcaacggttggtcgtattcttttaacggatcttctg
ccagaaggtttaccgttctctcttattgataaagtattatcaaaacgtgagatctcaaat
ttaattaacagctgctaccgtcgtcttggtcttaaagatacagtaatctttgctgacaaa
ctcatgtacacagggttctactacgcaatgcgttcaggatcatctgtaggttatgaggac
atggtgattccaccgcaaaagcaagagatcattgatcgcgcggaagcagaagttaaagaa
gtacagatgcaatactcacaaggtttggtaacaaacggtgagcgttataacaaagttatc
gatatctggtcacgtacgaacgaagaagttgcaaaaacaatgatgagcaaccttggtaaa
gacgaagtatttgacgagaaaacaggtaaaaatgttgaacaaacatcctttaactctatc
ttcatgatggcagactcaggagctcgtggtagtgccgcgcagatccgtcagcttgctggt
atgcgtggattgatggcaaaaccagatggttcgatcatcgaaacaccaatcacggctaac
ttccgtgaaggtctagacgttcttcagtacttcgtatcaacgcatggtgctcgtaaaggt
cttgcggatacggcacttaaaacagcgaactcaggttacttaacacgtcgtttagttgac
gttgcacaagaccttgtgatcgtgaatgaagattgtggtactaaagatggtcttctcatg
actcctatcgttgaaggtggggatatcgttgagccactgcgtgatcgtgttcttggtctt
gtagttgctgaggacgtttacgttcctggaacagaagaagtcctctttgaagccggtaca
cttttagatgaagcagctgtagagcttcttgatgaaaaaggtgtggatgagctaattgct
cgctccgcgattacttgtgaaaatcgtcatggtctttgtgctaaatgttatggtcgcgac
cttggtcgtggtcaccttgttaacccaggtgagtcagtgggtgttattgctgcacaatcc
atcggggagccaggtacacagttaacgatgcgtacgttccatatcgggggagcggcatcg
ggttctgcggcagtttcaaatgtacaggtgaaaactaaaggtacgcttaaacttgttcgt
atgaagactgttcgtaacaaagataaccaccttgtatcaatctcacgttcgggcgaatta
atcatcatggatgaatttggtcgtaaccgtgagcgttataaagttccttacggtgcaaca
attgttgttgacgaaggtggtagcgtagagattggggatatcgtggcaacatgggatccg
cataccattcctgttatcgttgaagtttcaggtcacattaaatttgtggattttgaagag
aacatcaacgtacagaaacaaacggatgatattacaggtctttcaaatcttatcgttctt
gactctaagcaacgcaatactggtggtaaacgtccatcaatctgcgtcgtagatgaagct
ggtaatgaactcaatatcccaggaacagatgtcacagcaatgtatacacttcctgtaggg
gcgattttaaaccttaatgatggggatgcggtatcaattggtgatcctcttgcacgtatt
ccacaagagtcatcaaaaacacgtgatattaccgggggtctaccacgagttgctgacctc
tttgaagcaagacgtccaaaagaagcggcaattcttgcagagaagacaggtatcgtgagc
tttggtcgtgagacaatgagtaaacagcgtcttatcatcacagattcagatggtgttgcg
catgaagagcttattccaaaatggcgtcatgtgaacgtgttcgaaggggaaactgttgaa
aaaggtgagatcatcgttgatggtgaattaagtgctcatgatattcttcgtctccttggt
gtgaaagagcttgctgagtatcttgtgaaagagattcaagacgtttatcgcttacaaggg
gttaagatctctgataaacatattgaagtcatcattcgtcagatgctccgtaaagtggaa
attcttgaagcaaacgatagtaactttatcaaaggtgaacaagcagaatacgtcgctctt
cttgaagagaatgagcgtgtggttgctgaaggtggcgttcctgcaacgtatcaacctgtc
ctccttgggattacaaaagcatcgcttgcaacagatagctttatttcagcggcatcgttc
caagaaacaacacgtgtcttaacagatgcttctattcgcggacttagagatcatctccgt
ggtcttaaagagaacgttatcgtgggtcgcttgatccctgcaggtaccggtcttatttat
cacgaagagcgtcgtaaagcgggtaactaa
DBGET
integrated database retrieval system
