Isoptericola halotolerans: UQW22_00945
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Entry
UQW22_00945 CDS
T11139
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
iha Isoptericola halotolerans
Pathway
iha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UQW22_00945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iha03021
]
UQW22_00945
03400 DNA repair and recombination proteins [BR:
iha03400
]
UQW22_00945
Enzymes [BR:
iha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UQW22_00945
Transcription machinery [BR:
iha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UQW22_00945
DNA repair and recombination proteins [BR:
iha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UQW22_00945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WTM16480
LinkDB
All DBs
Position
complement(186276..190157)
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNVFDELRIGLARADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDEARQEDLPNLQNEIDLEKKEITDRRDNDINARAQKLEAD
LAELEAEGAKADARRKVRDSAEREMAQLRKRSDAELDRLEQVWDRFKNLKVADLEGDEML
YRQLVDRYGTYFEGSMGAAAIQKRLESFDLEAEAETLRELIRTGKGQRKTRALKRLKVVN
AFLTTTNSPSAMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVELNHAQNIKSAKRMVERTR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLHHLTADRPGAKGEGR
VFSSQAEAIMAFDRGQLDINATIKVRMSDLVPPLRGFEAPEGWEPGQTLLFETTLGRTLF
NEALPVDYPFQNEIVGKKELSAIVNDLAERYPKVDVATALDALKDAGYRWATRSGVTISI
TDVAMPAEKDEILDEHEARALKVQGQYEKGLITDDERRQELIEIWTQATDKIAAVMRDHL
ENDERNTLYRMVSSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFI
ASHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLPLPVAERIGDQLLP
HPRVETSIYSRTFATDVVAEDGTVIAEAGSDAGDIIIGKVLDAGIDEVKVRSVLTCESRV
GTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPR
VTELFEARTPKGEAPIAEYTGRVAIEDTERTRHLVLTPDDGGEEIRYPVTKRARLLIADG
DHVAVGTQMVQGAVDPKKVLRILGPRATQKQLVDAVQDTYRSQGVDIHDKHIEVIVRQML
RRVTVLDAGDAALLPGELAERTRFEDANRKAVAEGGQPAAGRPELMGITKASLATDSWLS
AASFQETTRVLTEAAMSGRRDPLLGLKENVIIGKLIPAGTGLPRYRNIEVEPTEQAKAEL
YPSFGYDEIDFPTLGMGSGEAIPLEDLDFGDFR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgtatcggtctggccagggccgacgacatc
cgtgcctggtcgcacggcgaggtgaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgctgcggtgtc
gaggtcacccgctccaaggtccgccgtgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggttcttcaagggtgtgccgtcccgcctgggctacctgctcgaccta
gcgcccaaggacctggagaaggtcatctacttcgcggcctacatgatcacgtgggtcgac
gacgaggcgcgccaggaagaccttcccaacctccagaacgagatcgacctggagaagaag
gagatcaccgaccggcgcgacaacgacatcaacgcccgcgcccagaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggccgacgcgcgccgcaaggtccgcgactcg
gccgagcgcgagatggcgcagctgcgcaagcgctcggacgccgagctcgaccgcctggag
caggtctgggaccggttcaagaacctcaaggtcgccgacctcgagggcgacgagatgctg
taccgccagctcgtcgaccggtacggcacgtacttcgagggctcgatgggcgccgcggcg
atccagaagcgcctcgagagctttgacctggaggccgaggcggagacgctccgtgagctc
atccgcaccggcaagggtcagcgcaagacccgtgccctgaagcggctcaaggtcgtcaac
gcgttcctgacgacgacgaactcgccgtcggccatggtgctcgacgccgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacgtccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctgctcgacctc
ggcgcgccggagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgactcg
ctgttcgacaacggtcgccgcggccgcccggtcaccgggccgggcaaccgtccgctgaag
tcgatctccgacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgcgggctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctc
gtggagctcaaccacgcccagaacatcaagtcggccaagcgcatggtcgagcgcacccgt
cccgtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctcaaccgt
gcacccacgctgcaccgtctgggcatccaggccttcgagccgcagctcgtcgagggcaag
gcgatccacctgcacccgctcgtgtgcggcgcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgcccctgagcgcggaggcgcaggccgaggcccgcatcttgatgctc
tcgagcaacaacatcctcaagccgtcggacggccgtccggtcaccatgccctcccaggac
atgatcatcggtctgcaccacctcacggccgaccgccccggggcgaagggcgagggccgc
gtgttctcgtcccaggccgaggcgatcatggcgttcgacaggggccagctcgacatcaac
gccaccatcaaggtgcggatgtcggacctcgtgccgccgctgcgcggcttcgaggccccg
gagggctgggagcccgggcagacgctgctgttcgagacgaccctcggtcgcacgctcttc
aacgaggcgctgcccgtcgactacccgttccagaacgagatcgtcggcaagaaggagctc
tcggcgatcgtcaacgacctggcggagcgctacccgaaggtcgacgtggcgacggcgctc
gacgcgctgaaggacgccggctaccggtgggccacccgctcgggcgtcacgatctcgatc
accgatgtcgcgatgccggcggagaaggacgagatcctcgacgagcacgaggcgcgcgcg
ctcaaggtgcagggccagtacgagaagggcctgatcaccgacgacgagcggcgtcaggag
ctcatcgagatctggacccaggcgaccgacaagatcgccgccgtcatgcgcgaccacctc
gagaacgacgagcggaacaccctgtaccgcatggtctcctcgggtgcccgcggtaactgg
atgcaggtgcgtcagatcgccggtatgcgcggcctcgtggcgaacccgaagggcgagatc
atcccgcgcccgatcaagtccaactaccgtgagggcctgtccgtcctcgagtacttcatc
gcctcccacggtgcccgcaagggcctcgcggacacggcgctgcgtaccgcggactcgggc
tacctgacccggcggctggtcgacgtctcgcaggacgtcatcatccgcgaggaggactgc
ggcacggagcggggtctgcccctgccggtggccgagcgcatcggcgaccagctgctcccg
cacccccgtgtcgagacctcgatctactcgcggaccttcgccacggacgtcgtggcggag
gacggcacggtcatcgccgaggccggttccgacgcgggcgacatcatcatcggcaaggtg
ctcgacgccgggatcgatgaggtcaaggtccgttcggtcctgacctgcgagtcccgcgtc
ggcacctgcgcgaagtgctacggccggtcgctggccaccggcaagctcgtggacatcggc
gaggccgtgggcatcatcgcggcgcagtcgatcggtgagcccggtacgcagctgacgatg
cggacgttccacaccggtggtgtcgcctccgcggaggacatcacgcagggtctgccgcgt
gtcaccgagctcttcgaggcccgtaccccgaagggtgaggcgcccatcgcggagtacacc
ggtcgggtcgcgatcgaggacaccgagcgcacgcgtcacctcgtgctcacgcccgacgac
ggcggcgaggagatccgctaccccgtcaccaagcgtgcgcgcctgctgatcgccgacggc
gaccacgtcgccgtcgggacccagatggtccagggtgcggtcgaccccaagaaggtcctg
cgcatcctcggcccccgagccacgcagaagcagctcgtggacgccgtgcaggacacgtac
cgctcccagggcgtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctg
cgtcgcgtgaccgtgctggacgccggggacgccgcattgctgccgggtgagctcgccgag
cgcacccgcttcgaggacgcgaaccgcaaggccgtggcggagggtggccagccggctgcc
ggtcgtccggagctgatgggtatcacgaaggcctcgctcgccaccgactcgtggctctcg
gccgcctccttccaggagacgacccgggtgctcaccgaggcggcgatgagcggtcgtcgg
gacccgctgctgggcctcaaggagaacgtcatcatcggtaagctcatccccgccggcacg
ggcctgccccgctaccggaacatcgaggtggagccgaccgagcaggccaaggcggagctc
tacccgagcttcggctacgacgagatcgacttcccgaccctgggcatgggttcgggcgag
gcgatcccgctggaggacctggacttcggcgacttccgctga
DBGET
integrated database retrieval system
