Ignicoccus hospitalis: Igni_0211
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Entry
Igni_0211 CDS
T00587
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
iho
Ignicoccus hospitalis
Pathway
iho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Igni_0211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iho03019
]
Igni_0211
Messenger RNA biogenesis [BR:
iho03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Igni_0211
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Igni_0211
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP40_S1
S1_RRP4
KH_1
S1
Gifsy-2
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABU81395
UniProt:
A8A8Z3
LinkDB
All DBs
Position
complement(187120..187839)
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AA seq
239 aa
AA seq
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MNKQSNEVQRKIVMPGDLVVKGNYTINPKSIMYLYKVGDAVYAAVAGMAEITNGTVSLIP
FEGTYIPKPGDLVIGVVENFVVTHWQVDINSPYIGILHVSNLLGRPYNPAKDNLKEYLDI
GDYIIAKVESFDRTKDPILNVQGKGLGRVVEGKIVEIKPSRVPRVIGKKKSMLNVIKGDT
GCEIIVGANGRIWIKCPNKDLEDIVTLAIKLIEREAFATGLTEKVRVLIATEKHERGLL
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagcagagcaatgaggtacaaagaaagatagtgatgcccggggacttagtagtg
aagggcaactatactatcaacccaaagtcaataatgtacttgtacaaggtgggagacgcg
gtttacgcggcagtggcggggatggcagaaataacgaacggtactgtttccctcatcccg
tttgagggaacttacattcctaagccgggagacttagtaataggggtagtggaaaacttc
gtagtgacccactggcaagtggacataaactcgccctacataggcatacttcacgtcagc
aacctcctggggaggccctacaaccctgctaaggacaatttgaaagaatacttagatata
ggagactatatcatagccaaggtagaatcattcgacaggactaaagacccgatactgaac
gtgcaaggtaagggattggggagggtcgtagagggcaagatagtagaaataaagccgtca
agagtgcctagggtaataggaaagaagaagagtatgttgaacgtcataaagggagacacc
ggctgcgaaatcatagtgggcgccaacggcaggatatggatcaagtgtcccaacaaagac
ctcgaggacatagtaacgctggcaataaagctaatagagagggaggccttcgctaccggc
ctaactgagaaggtcagagttcttatcgccaccgaaaagcacgagaggggactgctatga
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